Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P17
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 44 2e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.9
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.9
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 26 3.3
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 5.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 5.7
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 7.5
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 10.0
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 25 10.0
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 118 NCTQDDYKFWXXXXXXXXXXCVLGSKNIFQRRLAHTDCYNGVDYQRPVKKEV---CECTR 288
N + D+ W C+ G + F R+ H C G VK+EV CECTR
Sbjct: 1221 NSEESDFVRWVPTDISGKPLCLRGRISSFYRKSIHKKCRVGSSLL--VKEEVLSKCECTR 1278
Query: 289 RDYECDFGF 315
D+ECD+ +
Sbjct: 1279 ADFECDYNY 1287
Score = 33.5 bits (73), Expect = 0.022
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Frame = +1
Query: 127 QDDYKFWXXXXXXXXXXCV-LGSKNIFQRRLAHTDCYNGVDY-QRPVKKEVCECTRRDYE 300
++D++ W C +G K F R+ A + C + CECT DYE
Sbjct: 570 KNDFEKWYTRYANGSPICSEMGKKEFFWRKKATSVCSVPKSITDLHGSFDACECTDEDYE 629
Query: 301 CDFGFMLSGE-ECTRNKSVKYDPFAVPSDCRPGQY-YLQTKGYRKIDGNMCTVSDHSDY- 471
C+ F+ + + EC K F C Q YR + GN CT + +
Sbjct: 630 CNTQFISNDQGEC------KLLDFIGSLLCASEDLDTFQKIPYRLVPGNKCTPNKRDSHR 683
Query: 472 APERKSC 492
P+ +C
Sbjct: 684 EPQTFNC 690
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 201 IPKTSSSYGLLQRRRLSKTREERSM 275
+PKTS LQ+R+L +EER+M
Sbjct: 189 MPKTSHDMYRLQKRKLQWVKEERTM 213
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 389 VQVNTTFKQKVIGKSTEICAQYLITQTTRQNENLV 493
++ N +F +KVI K+ +IC Q LI ++EN V
Sbjct: 134 IESNKSFDKKVIFKAADIC-QMLIATERIEHENSV 167
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 178 CVLGSKNIFQRRLAHTDCYNGVDYQR 255
CVL S+N++Q A+ C YQR
Sbjct: 433 CVLESRNLWQTSFAYWKCVADSGYQR 458
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 173 SRVCWALKTYSKDV*LIRIATTASIIKDP*RKKYANVHEGITNAISGL 316
+R W +K + +DV I+++ II + K + + T + G+
Sbjct: 455 NRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGV 502
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 218 ARRLWNMFLEPNTHETDELGGDGDQNL 138
A ++WN+ + HE E GDG +L
Sbjct: 184 ALQIWNLRVSKRVHEFQEFFGDGITSL 210
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 481 RKSCPLEEPTEFILVALNTKIARID 555
+K C E+P +FI +NTKI ID
Sbjct: 100 KKPC-YEQPDDFISYIVNTKIDSID 123
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 160 VVTVTKIYNRPEYSYEQKC 104
++T T I+N+P YE++C
Sbjct: 394 MLTCTNIHNKPVSDYEKEC 412
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 338 HEISQSNTIHLPFRRTAVQV 397
+EI S IH+P TA+ V
Sbjct: 233 YEIKDSRLIHIPLEETAIDV 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,638
Number of Sequences: 5004
Number of extensions: 51171
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -