Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P17
         (557 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    26   0.73 
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   3.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.8  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 19/92 (20%), Positives = 37/92 (40%)
 Frame = +1

Query: 190 SKNIFQRRLAHTDCYNGVDYQRPVKKEVCECTRRDYECDFGFMLSGEECTRNKSVKYDPF 369
           S  I Q+   H D  N +  ++  +++  +  +     D   +    +  RN  + Y  +
Sbjct: 548 SSVITQKVKDHCDTNNVMTEEQTGRRKNTQGCKDQVIIDAVIVGQAAKKQRNLDMAYIDY 607

Query: 370 AVPSDCRPGQYYLQTKGYRKIDGNMCTVSDHS 465
               D  P  Y L+     K+DGN+  +  H+
Sbjct: 608 KKAYDSVPHSYLLKVLQLYKVDGNVIKLMQHA 639


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 179 VCWALKTYSKDV 214
           VCWAL ++SK+V
Sbjct: 325 VCWALASFSKNV 336


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 20/96 (20%), Positives = 36/96 (37%)
 Frame = +2

Query: 131  TIINFGHRHHLTHPSRVCWALKTYSKDV*LIRIATTASIIKDP*RKKYANVHEGITNAIS 310
            T++N G R  +   S      +    +  L R  T  SII+    ++   +++   NA+ 
Sbjct: 1389 TVVNLGGRLKIEFKSET--DAEAIDSECDLQRQRTQQSIIERS--RQNDMLYQSSKNAVD 1444

Query: 311  GLCYPVKNAHEISQSNTIHLPFRRTAVQVNTTFKQK 418
            G CY   +     +       F R       T +Q+
Sbjct: 1445 GFCYSPSDRQCAEEREQAEQRFERQKNHTKDTIRQQ 1480


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,099
Number of Sequences: 2352
Number of extensions: 12459
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)