Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P16
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    27   2.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.0  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 207 CSERHERAADGLRGGTDLAASINKTAR*EPLHTFPYRIRMPPLSWALRRFL 359
           C E + R A G    T +   I  T    P  TF + I  PP SW + + L
Sbjct: 39  CKEFNARTA-GWMPNTPVPCKITVT----PQRTFTFTIHTPPTSWLISKTL 84


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 201 RAIATSCGGRGSAWQSSLVLHMAVRLVLRAFRVTR 97
           R+  T CG  G A  +S+V+HM  +  +R F   R
Sbjct: 578 RSNETMCGMVGIAIVASIVMHMVQKFNIRRFPFKR 612


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 210  SERHERAADGLRGGTDLAASIN 275
            SER  RA  G+ GG D A  +N
Sbjct: 1194 SERRSRAPYGMNGGEDGAMGVN 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,538
Number of Sequences: 5004
Number of extensions: 30757
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)