Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P16
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1000 + 13111912-13112572,13112616-13113172                       32   0.21 
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    29   1.5  
06_02_0182 - 12702890-12703387                                         29   2.6  
02_01_0303 + 2036222-2036524                                           27   6.0  
02_01_0035 - 220036-221419,222050-222801                               27   6.0  
01_06_0635 + 30757442-30757772,30757885-30758025,30758270-307585...    27   6.0  
12_01_0193 + 1436165-1437247                                           27   7.9  

>03_02_1000 + 13111912-13112572,13112616-13113172
          Length = 405

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 260 QVGSASEAIRGPLVPLAALFVLSPLVAGGEGVLGKAAWSCIWQCGWYCVL 111
           ++  A   ++G  +    L+VL   V GG G      W+ +W+C + C+L
Sbjct: 269 ELDGALAVLKGGAMSTLKLWVLDDDVGGGGGGDAGEQWAPVWECKYSCML 318


>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
            3808278-3808347,3808431-3808486,3808578-3808649,
            3808678-3808811,3808967-3809030,3809111-3809240,
            3809326-3809541,3809629-3809750,3810527-3810701,
            3810788-3810878,3811040-3811197,3811330-3811518,
            3813257-3813340,3813362-3813536,3815300-3815955,
            3816226-3816648,3816752-3816790
          Length = 1151

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 215  LAALFVLSPLVAGGEGVLGKAAWSCIWQCG 126
            LA LF L PL+  G G+   AA++ IW  G
Sbjct: 1019 LAVLFFLRPLLPAGYGIWMLAAFATIWGFG 1048


>06_02_0182 - 12702890-12703387
          Length = 165

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 305 RVERLLTRGLIY*SGQVGSASEAIRG 228
           R  RLLTRGL+  SG  GS S + RG
Sbjct: 55  RSVRLLTRGLVVPSGGGGSTSPSARG 80


>02_01_0303 + 2036222-2036524
          Length = 100

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 237 HPRPARAARCTVRAIATS-CGGRGS 166
           HP+ A A RCT + ++T   GG GS
Sbjct: 65  HPKSASAMRCTSKCVSTCVLGGAGS 89


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 261 PSRFRLGGHPRPARAARCTVRAIATSCGGR 172
           P  F +   P+PA+AA     A A + GG+
Sbjct: 18  PGAFAMSAPPQPAQAAAAAAAAAAAAAGGQ 47


>01_06_0635 +
           30757442-30757772,30757885-30758025,30758270-30758539,
           30758751-30758860,30759224-30759751
          Length = 459

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 243 GGHPRPARAARCTVRAIATSCGGR-GSAWQSSLVLHMAVRLVL 118
           GG PR ARAA     A A+   GR   A ++ L + +A  LVL
Sbjct: 41  GGFPRCARAAAAAAWAFASEDAGRVAFALKAGLAMLLASLLVL 83


>12_01_0193 + 1436165-1437247
          Length = 360

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -3

Query: 201 RAIATSCGGRGSAWQSSLVLHMAVRLVLRAFRVTRQRPMTVVRVRPYPASAAEITKAC 28
           +AI+ +C G     +       A+R  ++ FR  +     ++R R      + +TK C
Sbjct: 30  KAISDACDGITDWQEKEKARQKAIRAEIKRFRANQDAAEAILRKRKASMPPSTVTKFC 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,120
Number of Sequences: 37544
Number of extensions: 242839
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)