Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P16
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    35   0.027
U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya bind...    33   0.082
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    28   3.1  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z47357-11|CAA87428.3|  303|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z30662-12|CAA83142.3|  303|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z48544-4|CAA88443.3|  250|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  FCREPTCFGYFCRTCWIWSHSNN 81
           FCR   CF Y+C  CW   H  +
Sbjct: 534 FCRNKNCFKYYCHNCWALDHGKD 556


>U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya binding
           family protein 2 protein.
          Length = 422

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  YFCREPTCFGYFCRTCWIWSHSN 78
           YFC    CF Y+C  CW   HS+
Sbjct: 387 YFCPSLECFQYYCEPCWHKMHSH 409


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
 Frame = +1

Query: 10  YFCREPTCFGYFCRTCW----IWSHSNN----GHRPLTRNSKSTQYQPH 132
           YFC   +C  Y+C  CW    I  + +N     H P+ R    T+   H
Sbjct: 467 YFCGHASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTGDQTRLLKH 515


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform b
            protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 1    ARGYFCREPTCFGYFCRTCWIWSHSNNGHRPLTRNSKSTQYQPHC 135
            +RGY CR  +CF  F +  W   H N  +     N K TQ +  C
Sbjct: 1109 SRGY-CRCMSCFSIFFQRVWPQEHWNTAN-----NEKGTQKESGC 1147


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 131 CGWYCVLLELRVSGL*PLLE*DHIQQVRQK*PKHVGS 21
           CGW CV+ +   +G   +   DH   V++K P   GS
Sbjct: 12  CGWICVVTQDETTGEANVAFSDHSGSVQEKGPSKPGS 48


>Z47357-11|CAA87428.3|  303|Caenorhabditis elegans Hypothetical
           protein T16H12.9 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 22  EPTCFGYFCRTCWIWSHSNNGHRP 93
           +PT     C +CW+W    + +RP
Sbjct: 197 DPTGTVSLCSSCWVWRQLPSNYRP 220


>Z30662-12|CAA83142.3|  303|Caenorhabditis elegans Hypothetical
           protein T16H12.9 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 22  EPTCFGYFCRTCWIWSHSNNGHRP 93
           +PT     C +CW+W    + +RP
Sbjct: 197 DPTGTVSLCSSCWVWRQLPSNYRP 220


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 25  PTCFGYFCRTCWIWSHSNNGHRPLTRNS--KSTQYQPHCHM 141
           P CF  FCR C+  +        LTR +   +T+  P CH+
Sbjct: 307 PDCFFSFCRKCFERNCVCQSEDDLTRTTIDATTRRCPKCHV 347


>Z48544-4|CAA88443.3|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.5 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 28  TCFGYFCRTCWIWSHS 75
           TC    C  CW W HS
Sbjct: 120 TCDADLCEECWTWIHS 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,070
Number of Sequences: 27780
Number of extensions: 176827
Number of successful extensions: 387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)