Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P13
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    28   0.30 
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   2.1  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   2.8  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   3.7  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   4.8  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    24   4.8  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    23   8.5  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    23   8.5  

>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 256 KGKIAGQCGHAAVGAFEKA 312
           KGKIA QC HAA+  ++ A
Sbjct: 105 KGKIAAQCAHAALACYKIA 123



 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 216 KLVLVVRTDLNMSQ 257
           K+VLVVRTDL M++
Sbjct: 92  KMVLVVRTDLGMTK 105


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 315 EGFLKCTYSSMTTLASYFPF 256
           +GFL  TYS   T  + FPF
Sbjct: 102 DGFLYITYSGENTFGTVFPF 121


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 201 SREEYKLVLVVRTDLNMSQRENSW 272
           S   Y  ++ +RTDLNM   + +W
Sbjct: 68  STSNYSSIMGIRTDLNMVGNQYNW 91


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +2

Query: 158 WNHVRCWKEHKKV--CF-----KRRIQTCTSSKDRFKHE--PKGK*LANVVML 289
           W H R + +H K+  C        RI TC+  ++ + +E  P G     +V+L
Sbjct: 45  WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 145 KANKDIPIHIPQPKPVRKDM 86
           K N ++  + PQP+PV++D+
Sbjct: 385 KKNIEVSANEPQPRPVKEDV 404


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 138 TKIFQYIFHNLNL*EKIC*PPYFVSK 61
           TK  +Y FHNL   E    PP  +SK
Sbjct: 100 TKKNRYFFHNLKSHESYWEPPLEISK 125


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 176 WKEHKKVCFKRRIQTCTSSKDRFKHEPK 259
           ++EH++   K R++   +SK R ++ PK
Sbjct: 433 YEEHRQKIVKERLEKQRASKIRSQNRPK 460


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 182 LSSIGHDSKIFFQSKQ 135
           L +I HDSK FFQ K+
Sbjct: 15  LEAIFHDSKDFFQLKE 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,170
Number of Sequences: 5004
Number of extensions: 23459
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)