Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P13
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 28 1.4
01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350... 28 1.4
05_06_0109 - 25624241-25624290,25624648-25624687,25624959-256250... 27 2.4
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 27 3.2
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436... 26 5.6
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 26 5.6
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 26 7.4
10_08_0915 + 21539651-21540226,21540276-21541139 25 9.7
01_06_0107 + 26519990-26520055,26520899-26521029,26521113-265211... 25 9.7
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 28.3 bits (60), Expect = 1.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 270 WPMWSCCCRC 299
WP W CCC C
Sbjct: 613 WPSWCCCCCC 622
>01_05_0404 -
21833736-21834035,21834506-21834662,21834834-21835080,
21835424-21835637,21836565-21836728,21836843-21836950,
21841596-21841797,21843676-21844194
Length = 636
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 163 IPRYFFKANKDIPIHIPQPK 104
+ R+F ++N+ I IH+P+PK
Sbjct: 221 VDRFFLESNETIKIHMPKPK 240
>05_06_0109 -
25624241-25624290,25624648-25624687,25624959-25625031,
25625123-25625200,25625533-25625569,25625892-25625952,
25626110-25626328,25626400-25626456
Length = 204
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 259 GKIAGQCGHAAVGAFEKAL 315
GKIA QC HAA G + + +
Sbjct: 105 GKIASQCAHAATGLYAELM 123
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Frame = +2
Query: 110 LWNMY------WNIFVCFEKISWNHVRCWKEHKKVCFKRRIQTCTSSKDR 241
LW++Y N+ C+ ++W HV C H + + T DR
Sbjct: 489 LWDLYRVRAIDTNLLKCYFLLTWKHVHCKAPHVALLDPAVVNETTLKNDR 538
>09_02_0108 -
4358051-4358645,4358722-4359137,4360307-4360903,
4361068-4361139,4361236-4361370,4361485-4361585,
4362719-4362863
Length = 686
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 221 CTSSKDRFKHEPKGK*LANVV 283
C++SK R+K EP+ K L +V+
Sbjct: 628 CSNSKGRYKSEPRKKRLIDVI 648
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 26.2 bits (55), Expect = 5.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 264 NSWPMWSCCCRC 299
N WP W CC C
Sbjct: 661 NCWPKWCICCCC 672
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 25.8 bits (54), Expect = 7.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +2
Query: 128 NIFVCFEKISWNHVRCWKEH 187
N+ C+ ++W HV C H
Sbjct: 465 NLLKCYSLLTWKHVHCKAPH 484
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 166 MIPRYFFKANKDIPIHIPQPKPVRKDMLTSI 74
++PRYFF+ D+ + RK+++T +
Sbjct: 133 VLPRYFFREAADVEALMEAAASARKEVITVV 163
>01_06_0107 +
26519990-26520055,26520899-26521029,26521113-26521179,
26521810-26522017,26522554-26522723,26522904-26522981,
26523271-26523403,26523451-26523578,26524188-26524244,
26524726-26524878
Length = 396
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 125 WNIFVCFEKISWNHVRCWKEHKKVCFKRRIQTCTSSKDRFKHE 253
W++ +S+ HV+C + +RR++T + DR K +
Sbjct: 313 WSLLTFHAYVSY-HVKCSEGFMHTRMRRRVETLIQALDRAKSD 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,344,735
Number of Sequences: 37544
Number of extensions: 125872
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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