Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P13
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical ...    27   2.2  
U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin prote...    26   5.1  
AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-...    26   5.1  
U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical pr...    26   6.8  

>AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical
           protein C24G6.8 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 259 GKIAGQCGHAAVGAFEKAL 315
           GKIA Q GHA +G + +A+
Sbjct: 216 GKIAAQVGHATLGVYRQAM 234


>U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin protein
           5 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 132 SLFALKKYLGIMSDAGK-NIKKFVSREEYKLVLVVR 236
           SL AL    G  SD  + N KKF+  +EYKL    R
Sbjct: 10  SLAALVSCQGDASDPKETNYKKFIGEQEYKLPFKTR 45


>AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-5
           protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 132 SLFALKKYLGIMSDAGK-NIKKFVSREEYKLVLVVR 236
           SL AL    G  SD  + N KKF+  +EYKL    R
Sbjct: 10  SLAALVSCQGDASDPKETNYKKFIGEQEYKLPFKTR 45


>U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical
           protein C06A6.7 protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 200 NKLFYVLSSIGHDSKIFF-QSKQRYSNTYSTT*TCEKRYVNLHISFRSNDDI 48
           +K F  L     DS+ FF Q     S T+ T    EK+++ +++++ +NDD+
Sbjct: 43  DKFFTPLVGNFADSEHFFNQWTSMSSATHFTFRIKEKKFLTVNVTYYNNDDM 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,797,903
Number of Sequences: 27780
Number of extensions: 128750
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)