Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P12
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    70   2e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    44   1e-05
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    37   0.002
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    30   0.19 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    29   0.43 
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    28   0.57 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   0.75 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   2.3  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   4.0  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   4.0  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   5.3  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   5.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    24   9.3  

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 36/95 (37%), Positives = 56/95 (58%)
 Frame = +3

Query: 138 IPLVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIE 317
           IPLVIDNGS+Q R GW   ++P L+F NL++R R  +  + +         +GND +   
Sbjct: 25  IPLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTS-------TLVGNDTLIEV 77

Query: 318 AVRFQLKTQFDKNVVTHFEAQEQVCDYLFSHLSID 422
             R   ++ F++NV+++++  EQV DY F  L ID
Sbjct: 78  GSRSIARSPFERNVISNWDLMEQVLDYTFLKLGID 112


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +3

Query: 141 PLVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEA 320
           P+V+DNG+   +VG++    P   F +++ RP     +K     +   + +G++   + +
Sbjct: 5   PIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQI-KDVMVGDEAEAVRS 63

Query: 321 VRFQLKTQFDKNVVTHFEAQEQVCDY-LFSHLSIDAEG 431
           +  Q+K   +  ++  FE   Q+ DY  F  L ID  G
Sbjct: 64  L-LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPR 239
           LVIDNGS  C+ G++  + P  +F +++ RPR
Sbjct: 8   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 177 VGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVT 278
           +GW +C+  +L  KN I     +  +KD + PVT
Sbjct: 347 IGWPLCQPSDLKSKNKIGNVSIEEGQKDVKSPVT 380


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = +3

Query: 135 HIPLVIDNGSYQCRVGWSICEEPNLIFKNLIA 230
           ++P+++DNG+   ++G++  + P+ +F  +IA
Sbjct: 5   NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIA 36


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 195 EEPNLIFKNLIARPRKDRCK-KDAEPP 272
           ++PN IF+NLI   +K R K  +A+PP
Sbjct: 363 DDPNRIFENLILENKKKRKKGSEAKPP 389


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 IPLVIDNGSYQCRVGWSICEEPNLIFKNLIA 230
           I L+I NG  +  + W +CE P LI K  +A
Sbjct: 5   IALLIGNGGREHTIAWKLCESP-LISKVYVA 34


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 210 IFKNLIARPRKD-RCKKDAEPPVTPPIQIGNDIVNIEAVRFQLKTQFDKNVVTHFEAQEQ 386
           I  N I +P +  R    + PPV PP  +  ++  +       K  FD  +     A E+
Sbjct: 250 IIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEK 309

Query: 387 VCDYLFSHLSIDAEGNVP 440
           V + L S      +G  P
Sbjct: 310 VSENLGSETRESLQGAKP 327


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 185  PTNSALI*SIIYHKRYMSKFKRWFIFVNNIRNSFIIF 75
            P N AL+ S+++H R +  F++  +   NIRN  I+F
Sbjct: 1190 PENFALLDSLLHHLRRIIAFEK--VNKMNIRNVCIVF 1224


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 360 PHFYQIVFLIETSQLLCLLYHFLFE*EVLQVAQ 262
           PH Y + ++  T  ++ LLY +L   E L V++
Sbjct: 310 PHMYYVFYITSTFWIIYLLYVWLILPESLDVSE 342


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
 Frame = +3

Query: 57  DNILVLKDYKTVPDIVYEYEPTLKFGHIPLVIDNGSYQCRVGWSICEEPNLIFKNLIARP 236
           D   V + ++   +I+++Y+P L   +IP+ +D G Y  RV +      +L  +N+    
Sbjct: 690 DAFKVCRTHRLDLNILFDYDPDLFLKNIPVFVD-GLY--RVDYLDLFLTSLKPENVTTGM 746

Query: 237 RKDRCKKDAEPPVTPPIQIGNDI-VNIEAVRFQLKTQFDKNVVTHFEA 377
             D  K  ++  VT    I N + +  + +R  L +++     THF+A
Sbjct: 747 YSDTSKSQSQQSVT---TIDNKVNLLCKIIREHLTSKYGD---THFQA 788


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
 Frame = +3

Query: 78  DYKTVPDIVYEYEPTLKFGHIPLVIDNGSYQC-----RVGWSICEEP-NLIFKNLIARPR 239
           D K +PD V   EP   + H  +++ + ++ C        W++ +    +I     A   
Sbjct: 587 DGKEIPDFVLNREP---YRHATVLVAHDNFGCGSSREHAPWALNDFGIRVIIAPSFADIF 643

Query: 240 KDRCKKDAEPPVTPPIQIGNDIVNIEAVRFQLKTQFDKNVVTHFEAQ 380
            + C K+   P+  PI+  ND++     + +         +T+ + Q
Sbjct: 644 FNNCFKNGMLPIPTPIEQVNDMMKAAENQVKFSVDLVNQTITYGDKQ 690


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 267 PPVTPPIQIGNDIVNIEAVRFQLKTQFDKNVVTHFEAQEQVCDYLFSH 410
           PP TP   +G  + N+   +++ + +FD    T  + QE   D LF +
Sbjct: 337 PPGTPVHVMGRQLENVFKEKWEARPKFDD--ATLVKQQEAETDALFDN 382


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 155 IYHKRYMSKFKRWFIFVNNIRNSFIIF*YKYIIHADKKIIYN 30
           ++ KR+   +   ++FVN   N F+   Y+     D+  I+N
Sbjct: 458 LWSKRFSRFYYGHYVFVNTCHNFFLTL-YQSFTEVDENSIFN 498


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 33  INYFFVSMDNILVLKDYKTVPDIVYEYEPT 122
           I +F  + D   V  D     D+VYEY P+
Sbjct: 110 ITFFSGTSDYTSVYYDTTGTDDVVYEYHPS 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,467
Number of Sequences: 5004
Number of extensions: 41671
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)