Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P12
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 37 0.006
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.008
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 37 0.008
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 37 0.008
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 37 0.008
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 37 0.008
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 36 0.010
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 36 0.010
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 36 0.010
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 36 0.010
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 36 0.013
U23172-11|AAL27245.1| 327|Caenorhabditis elegans Hypothetical p... 30 0.88
U23172-10|AAM22066.1| 352|Caenorhabditis elegans Hypothetical p... 30 0.88
U23172-9|AAK67227.1| 362|Caenorhabditis elegans Hypothetical pr... 30 0.88
U23172-7|AAK67228.1| 376|Caenorhabditis elegans Hypothetical pr... 30 0.88
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 29 1.5
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 29 2.0
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 29 2.0
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 2.7
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 2.7
U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 27 4.7
Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF099920-5|AAK29843.2| 361|Caenorhabditis elegans Serpentine re... 27 6.2
Z82085-5|CAB04989.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.2
AL021474-1|CAA16308.1| 343|Caenorhabditis elegans Hypothetical ... 27 8.2
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +3
Query: 141 PLVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEA 320
P+VIDNGS + G++ ++P + F N + RP+ R + I IG +
Sbjct: 10 PVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGG---LDGDIFIGPKAESNRG 66
Query: 321 VRFQLKTQFDKNVVTHFEAQEQVCDYLF 404
+ F ++ + +V ++ E++ +Y+F
Sbjct: 67 L-FSIEYPMEHGIVNNWSDMEKIWEYIF 93
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 64
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 65 -LTLKYPIEHGIVTNWDDMEKIWHHTF 90
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
LV+DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 36.3 bits (80), Expect = 0.010
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPR 239
LV+DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 36.3 bits (80), Expect = 0.010
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPR 239
LV+DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 36.3 bits (80), Expect = 0.010
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPR 239
LV+DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 36.3 bits (80), Expect = 0.010
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPR 239
LV+DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/87 (21%), Positives = 43/87 (49%)
Frame = +3
Query: 144 LVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIEAV 323
L++DNGS C+ G++ + P +F +++ RPR + +G++ + +
Sbjct: 9 LILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS---YVGDEAQSKRGI 65
Query: 324 RFQLKTQFDKNVVTHFEAQEQVCDYLF 404
LK + +VT+++ E++ + F
Sbjct: 66 -LTLKYPIEHGIVTNWDDMEKIWHHTF 91
>U23172-11|AAL27245.1| 327|Caenorhabditis elegans Hypothetical
protein F25B5.3c protein.
Length = 327
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 33 INYFFVSMDNILVLKDYKTVPDIVYEYEPTLKFGHIPLVIDNGSY 167
+ Y+ S+D+ L+ Y+ V DIV ++PTL + I N S+
Sbjct: 283 VGYYNGSLDDTAALQHYEEVYDIVLIHDPTLNVAQKIVDIINSSH 327
>U23172-10|AAM22066.1| 352|Caenorhabditis elegans Hypothetical
protein F25B5.3d protein.
Length = 352
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 33 INYFFVSMDNILVLKDYKTVPDIVYEYEPTLKFGHIPLVIDNGSY 167
+ Y+ S+D+ L+ Y+ V DIV ++PTL + I N S+
Sbjct: 308 VGYYNGSLDDTAALQHYEEVYDIVLIHDPTLNVAQKIVDIINSSH 352
>U23172-9|AAK67227.1| 362|Caenorhabditis elegans Hypothetical
protein F25B5.3a protein.
Length = 362
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 33 INYFFVSMDNILVLKDYKTVPDIVYEYEPTLKFGHIPLVIDNGSY 167
+ Y+ S+D+ L+ Y+ V DIV ++PTL + I N S+
Sbjct: 318 VGYYNGSLDDTAALQHYEEVYDIVLIHDPTLNVAQKIVDIINSSH 362
>U23172-7|AAK67228.1| 376|Caenorhabditis elegans Hypothetical
protein F25B5.3b protein.
Length = 376
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 33 INYFFVSMDNILVLKDYKTVPDIVYEYEPTLKFGHIPLVIDNGSY 167
+ Y+ S+D+ L+ Y+ V DIV ++PTL + I N S+
Sbjct: 332 VGYYNGSLDDTAALQHYEEVYDIVLIHDPTLNVAQKIVDIINSSH 376
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/99 (18%), Positives = 43/99 (43%)
Frame = +3
Query: 132 GHIPLVIDNGSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIVN 311
G +V+DNG+ + G++ P IF +++ RP ++ + + +G +
Sbjct: 5 GRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEI-KDLMVGEECSQ 63
Query: 312 IEAVRFQLKTQFDKNVVTHFEAQEQVCDYLFSHLSIDAE 428
+ + + D +V +++ V D+ F +D +
Sbjct: 64 LRQM-LDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDID 101
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 147 VIDNGSYQCR--VGWSICEEPNLIFKNLIARPRKDRCKKDAE 266
V NG Y+C VG S + + N ARP + C KDA+
Sbjct: 47 VFVNGQYRCECPVGVSRLADGRCLVVNECARPSLNACHKDAQ 88
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 147 VIDNGSYQCR--VGWSICEEPNLIFKNLIARPRKDRCKKDAE 266
V NG Y+C VG S + + N ARP + C KDA+
Sbjct: 47 VFVNGQYRCECPVGVSRLADGRCLVVNECARPSLNACHKDAQ 88
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 159 GSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQI 293
G CR GW IC +P++I I K PP TP Q+
Sbjct: 546 GGSVCREGWCICPDPSMIVNRGIC---IQSGPKPTLPPRTPIPQV 587
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 159 GSYQCRVGWSICEEPNLIFKNLIARPRKDRCKKDAEPPVTPPIQI 293
G CR GW IC +P++I I K PP TP Q+
Sbjct: 643 GGSVCREGWCICPDPSMIVNRGIC---IQSGPKPTLPPRTPIPQV 684
>U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical
protein ZC513.5 protein.
Length = 492
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 204 LVLHILTNQLCTDMIHYLSQEVYVQI*ALVHIRKQYQEQF 85
++LH+L N LCT M ++ + Y AL ++ Q+Q +F
Sbjct: 344 VILHLLANVLCTGMFLLVASKNYPGFDALNYL--QFQNRF 381
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 33 INYFFVSMDNILVLKDYKTVPDIVYEYEPTLKFGHIPLVID 155
IN+ + + N L+L+D+ P+ +YE+ +P I+
Sbjct: 229 INFNYFQVQNGLILQDFNGEPEPIYEFYEEQYVQQVPTEIE 269
>Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical
protein F34H10.3 protein.
Length = 248
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -2
Query: 180 QLCTDMIHYLSQEV----YVQI*ALVHIRKQYQEQ 88
Q +IHY Q+V Y+Q+ L H+RKQ +Q
Sbjct: 102 QQIQSLIHYHEQQVKYRSYIQLDILRHLRKQLNDQ 136
>AF099920-5|AAK29843.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein94 protein.
Length = 361
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 323 HSFYVYYIISYLNRRCYRWLSILFASI 243
H +++ +I+ RRC WLS+ A I
Sbjct: 115 HMYWINIVINDFFRRCSTWLSVAMALI 141
>Z82085-5|CAB04989.1| 342|Caenorhabditis elegans Hypothetical
protein ZK218.6 protein.
Length = 342
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 174 RVGWSICEEPNLIFKNLIARPRKDRCKKDAE 266
R G C N+ F+N++ R RC K+ E
Sbjct: 34 RFGALACFRCNVFFRNMLLNKRNIRCSKNPE 64
>AL021474-1|CAA16308.1| 343|Caenorhabditis elegans Hypothetical
protein Y32F6A.1 protein.
Length = 343
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 216 KNLIARPRKDRCKKDAEPPVTPPIQIGNDIVNIE 317
+N I RP+ D +AE PV Q ND +N E
Sbjct: 2 ENRIKRPKLDPSMDEAESPVRDGSQQNNDNLNQE 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,815,853
Number of Sequences: 27780
Number of extensions: 240452
Number of successful extensions: 698
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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