Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P12
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  LCRTYHVINYFFVSMDNILVLKD 80
           +C T  ++N   +S+D  + +KD
Sbjct: 107 MCSTASILNLCAISLDRYIHIKD 129


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 99  YQEQFYNLLVQVYYPC 52
           ++ +F   L+Q+Y PC
Sbjct: 237 FKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 99  YQEQFYNLLVQVYYPC 52
           ++ +F   L+Q+Y PC
Sbjct: 237 FKREFSYYLIQIYIPC 252


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 96  QEQFYNLLVQVYYPC 52
           Q    N L+QVY PC
Sbjct: 210 QRHMGNFLIQVYGPC 224


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 355 MWLHILRHKNKYVITFFH 408
           +W+ +L+H N   + F H
Sbjct: 157 VWVELLKHFNYMKVIFIH 174


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 330 QLKTQFDKNVVTHFEAQEQV 389
           QL+  FD N + +FE    +
Sbjct: 33  QLEVNFDGNYINNFETSNGI 52


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 50 DKKIIYNVISAA 15
          D +I YN+ISAA
Sbjct: 44 DDEITYNIISAA 55


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 80  IF*YKYIIHADKKIIYNV 27
           IF Y Y+ HA+++ +Y +
Sbjct: 661 IFKYGYVSHANQRNMYKL 678


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 50 DKKIIYNVISAA 15
          D +I YN+ISAA
Sbjct: 44 DDEITYNIISAA 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,321
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)