Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P11
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   1.1  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    27   1.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   3.3  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.4  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   5.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.6  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 275 CSRCNVESSDIDIFHSNIEQNLNSFSYIIALKY 373
           C+RC +    I   H+NI +  N  S I +L Y
Sbjct: 230 CTRCTIPKRVITSMHNNIAELYNPISCIKSLPY 262


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 VSDNGSGVGGAAVLFMFMLGMFIYEKYRYFNAMIYENEFK 337
           V  N S +GG    F+  LG F+ EK+R    +++   ++
Sbjct: 33  VFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYE 72


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 81  LLT*HSDVSPYIINFVIECYLN 16
           L T HSDV P II  + E YLN
Sbjct: 784 LSTGHSDVVPEIIELMDEYYLN 805


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 326 YSNEIYRYQMIRRYIESMYQYF 261
           YS+EIY+    R +++++Y Y+
Sbjct: 10  YSSEIYKLPTTRLHMDTLYYYY 31


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -1

Query: 417 LFMFMLGMFIYEKYRYFNAMIYEN 346
           ++MF+LGMF+   + +  +++++N
Sbjct: 94  VYMFILGMFVTPIFSFLYSLLFKN 117


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 50  YGETSECYVSKILDFFDRPRDYVSDGIIMSE*KNSN 157
           YG T  C  SKI  F  R  DY  + ++  +  N N
Sbjct: 189 YGHTISCLGSKICLFGGRLLDYYFNDLVCFDLNNLN 224


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 387 YEKYRYFNAMIYENEFKFCSIFE*NISISDDSTLH 283
           YE +    A+I E + K   IFE N  I DD  +H
Sbjct: 124 YETFCEEEALI-EEKLKNIEIFEKNFVIMDDDLIH 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,007
Number of Sequences: 5004
Number of extensions: 30234
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)