Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P11
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523...    28   3.3  
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    27   10.0 

>10_02_0094 -
           5228472-5228703,5229040-5229133,5230627-5230675,
           5231229-5231321,5231404-5231635,5232416-5232506,
           5232693-5232784,5232862-5232970,5233331-5233430,
           5233614-5233754,5233846-5234010,5234088-5234279,
           5234409-5234537,5234619-5234734,5234821-5234965,
           5235039-5235102,5235241-5235463,5235584-5236244,
           5236909-5237250
          Length = 1089

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 266 IDTCSRCNVESSDIDIFH----SNIEQNLNSFSYII 361
           I TC++C    +  ++FH    + IE N+N++S +I
Sbjct: 503 ISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALI 538


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 374 DILTQ*YMKMNSNFVRYSNEIYRYQMIRRYIESMYQ 267
           D L+Q Y K+  +  R   +   Y+MI +Y+E  Y+
Sbjct: 603 DPLSQCYKKLGCSINRVVEDSEDYKMILKYLEKTYE 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,942
Number of Sequences: 37544
Number of extensions: 157272
Number of successful extensions: 297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)