Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P11
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    27   8.9  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    27   8.9  

>Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical
           protein F54B11.8 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 171 CCLRSHCLNPSLKIS*A*TRSVRCILLIFNKILIHALDVTSNHLISIYFIRISNK 335
           CC   +  N  LK+      S  C L+IF   LI  + V +N  I+  ++ + NK
Sbjct: 135 CC--EYLSNTFLKLKLKIAASRTCFLIIFMLFLIFKIIVCTNGQITSNYLNLKNK 187


>Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical
           protein C44H9.7b protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 151 IFLFAHNYTVAYVITWPVKKIQNFAHVTLGRLPVHNKLRY 32
           +F  +H   +   I +P   + NFA++T+  +P   KLR+
Sbjct: 90  VFSLSHPSDLVACIRFPSDVLNNFANITVQPIPQIPKLRF 129


>Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical
           protein C44H9.7a protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 151 IFLFAHNYTVAYVITWPVKKIQNFAHVTLGRLPVHNKLRY 32
           +F  +H   +   I +P   + NFA++T+  +P   KLR+
Sbjct: 90  VFSLSHPSDLVACIRFPSDVLNNFANITVQPIPQIPKLRF 129


>AF016662-7|AAB66060.1|  561|Caenorhabditis elegans Hypothetical
           protein C33C12.8 protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 41  FIMYGETSECYVSKILDF--FDRPRDYVSD 124
           FI   E SE   SK +D+  FDR  DYVSD
Sbjct: 398 FIFGTEASEGSKSKDVDYGSFDRAEDYVSD 427


>AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical
           protein Y17G9B.6 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 344 NSNFVRYSNEIYRYQMIRRYIESMYQYFIEYQ*YTSNTPSLCLTYF 207
           ++ F +     YR  +   Y +S  Q+  EY  Y SNTPSL   +F
Sbjct: 53  STGFSKGPQSDYRTLISTYYQQSFQQFSFEYC-YHSNTPSLVSLFF 97


>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 IHALDVTSNHLISIYFIRISNKI*IHFH 353
           + ++ V S+H++ I F RI NKI +  H
Sbjct: 354 LRSIQVISDHVLRIIFKRIDNKIELEDH 381


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 IHALDVTSNHLISIYFIRISNKI*IHFH 353
           + ++ V S+H++ I F RI NKI +  H
Sbjct: 350 LRSIQVISDHVLRIIFKRIDNKIELEDH 377


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 356 YMKMNSNFVRY-SNEIYRYQMIRRYIESMYQYFIEYQ*YTSN 234
           Y K+   F ++ + +IYR ++IR++IES   + I +   TS+
Sbjct: 205 YFKIYQAFAKHRARQIYRQKVIRKHIESTILHEISHVLPTSD 246


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 IHALDVTSNHLISIYFIRISNKI*IHFH 353
           + ++ V S+H++ I F RI NKI +  H
Sbjct: 354 LRSIQVISDHVLRIIFKRIDNKIELEDH 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,901,236
Number of Sequences: 27780
Number of extensions: 159350
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)