Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P10
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    29   0.39 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   2.7  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   4.8  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   4.8  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.4  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   8.4  

>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 166 LAKRSLNDD--SVSEHPTESKLSSERLRLATSCSYICWVRICRCAYLVKS*MSWHDVSTW 339
           LA RS +DD  S S  PT + ++S      ++ SY+  +R  +          W D+   
Sbjct: 4   LATRSSHDDPYSRSSLPTSNAINSNHESNGSTFSYVQSLRRAKATV-------WSDIGRV 56

Query: 340 APMHHQPRLLS 372
           AP+H  P + S
Sbjct: 57  APLHSSPSIKS 67


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 294 VFGEVL---DELARRVHLGSNAPSAPSTLEMAPIYPDIDKF 407
           + GEVL   DEL   +HLG+   S PS   MA  +   D+F
Sbjct: 599 LLGEVLRLSDELLP-IHLGAKIQSLPSLFNMASQFTAEDRF 638


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 197 SRNTQRSRSSRPKDSGWRLPALTFAGSEYV 286
           S+ T  +R S+PK +G   P + F   EY+
Sbjct: 147 SKMTSVARKSKPKRAGTFYPVIFFPNKEYL 176


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 PSAPSTLEMAPIYPDID 401
           P +PS ++ +P YPD D
Sbjct: 59  PRSPSEMDWSPYYPDFD 75


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 TRETILKRRFRLGTPNGVEALVRKTQVGD 251
           TR+   K++F +GT +GV  L  K   GD
Sbjct: 198 TRDQHSKKKFAVGTASGVITLFTKGDWGD 226


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 151 SYCRVLAKRSLNDDSVSEHPTESKLSSERLRLATS 255
           S+    A   + + +V +HP   KLS + L L  S
Sbjct: 165 SHYEQFANNDVTESAVDDHPATRKLSRDELYLPIS 199


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 107 EYNKPEPQENENFLI*NI 54
           +YN P+P+ NE++L  N+
Sbjct: 182 DYNDPKPEANEDYLSLNL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,068
Number of Sequences: 5004
Number of extensions: 40022
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)