Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P10
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0376 + 2931338-2931414,2931609-2931755,2933105-2933173,293...    30   1.2  
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699...    28   4.8  
06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818           27   6.3  
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658...    27   6.3  
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778...    27   6.3  
02_05_0585 + 30155021-30155910,30156130-30157006                       27   8.4  

>03_01_0376 +
           2931338-2931414,2931609-2931755,2933105-2933173,
           2933256-2933427,2933505-2933733,2933826-2934343
          Length = 403

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 334 TWAPMHHQPRLLSKWRRYILTSINS 408
           TW+P  H    L+K ++++LT +NS
Sbjct: 225 TWSPSEHDDDALAKNKKFVLTKLNS 249


>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
            32770080-32770283,32770373-32770523,32771424-32771533,
            32772534-32772903,32773031-32773189,32773719-32773848,
            32773921-32773989,32774066-32774154,32774319-32774439,
            32775878-32776148
          Length = 1278

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 134  ILSRSYPIAEYSRNDP*TTIPSRNTQRSRSS 226
            +LSRS  +A  SRN+P  ++PS   Q  R++
Sbjct: 950  MLSRSMTLAGRSRNEPSPSVPSYTAQTYRNA 980


>06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818
          Length = 112

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 403 LSMSGYIGAISRVDGADGALEPR--WTRRAN 317
           L +  YI A    DGA  A +PR  W RR N
Sbjct: 40  LLLVNYIAAHGEYDGAGAAADPRVAWPRRGN 70


>02_04_0281 +
           21563588-21563696,21565053-21565708,21565793-21565879,
           21566487-21567461,21567640-21567786
          Length = 657

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 101 YTLCGVRLSYFILSRSYPIAEYS-RNDP*TTIPSRNTQRSRSSRPKDS 241
           +T  GV  +  + SRS   +E S R D      S NT+ S SS P DS
Sbjct: 498 HTADGVSQNLLVESRSISSSEPSDRGDEFRVFLSNNTEGSSSSAPADS 545


>02_02_0587 +
           11875678-11877234,11877606-11877608,11877755-11877823,
           11878605-11878719,11879139-11879248
          Length = 617

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 255 LLLHLLGQNMSLRVFG-EVLDELARRVHLGSNAPSAPSTLEMAPIYPDID 401
           LLLH L +  S+ V   E +   + R+ L S +PS P+TL    I+PD D
Sbjct: 6   LLLHHLRRRYSVSVSSAEDMVVSSLRI-LSSASPSEPTTLPPPTIHPDPD 54


>02_05_0585 + 30155021-30155910,30156130-30157006
          Length = 588

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 325 RANSSKTSPNTRSDIF*PSKCKSRKSPT 242
           R +SS+  P+T SDI   S C S  S T
Sbjct: 139 RGSSSRCRPSTSSDISDESSCSSMSSTT 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,088
Number of Sequences: 37544
Number of extensions: 264111
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)