Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P10
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    29   2.5  
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z82268-11|CAB05203.1|  262|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical p...    28   4.3  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL021476-2|CAA16318.1|  262|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    27   10.0 

>Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical
           protein F16C3.1 protein.
          Length = 399

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 238 LRLATSCSYICWVRICRCAYLVKS*MSWHDVSTWAPMHHQPRLLSKWRRYI 390
           LR  TS  Y+C + +  C +L+   +SW D     P++ +  L  K+  ++
Sbjct: 51  LRRLTSNIYLCTLSVSSCFFLLTVIISWADTYMGLPLYSESELGCKFFSFL 101


>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical
           protein T07F10.1b protein.
          Length = 976

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 86  VVLVYYTLCGVRLSYFILSRSYPIAEYSRNDP*TTIPSRNTQRSRSSRPKDS 241
           V+ V+ TL GV ++ FI +     ++YSRNDP   I S N     +++P+D+
Sbjct: 19  VLPVFCTLLGVLITAFI-TWHITKSQYSRNDPHDEIESENVP---AAKPEDN 66


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical
           protein T07F10.1a protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 86  VVLVYYTLCGVRLSYFILSRSYPIAEYSRNDP*TTIPSRNTQRSRSSRPKDS 241
           V+ V+ TL GV ++ FI +     ++YSRNDP   I S N     +++P+D+
Sbjct: 31  VLPVFCTLLGVLITAFI-TWHITKSQYSRNDPHDEIESENVP---AAKPEDN 78


>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +3

Query: 39  CVLALNILNEKXXXXXXXXXXXXSVVSGLAILYSAAVILLPSTRETILKRRFRLGTPNGV 218
           CVL +NI NEK             V S L +LY  ++ +    R   + R   L +    
Sbjct: 309 CVLVINIFNEKIFILIWLWFTLLFVASTLDMLYWFSISMFHRDRFRFVLRHLELTSDPDK 368

Query: 219 EALVRK---TQVGDFLLLHL 269
             L RK    QV  FL  +L
Sbjct: 369 PELFRKEKRKQVEHFLRTYL 388


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>Z82268-11|CAB05203.1|  262|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1b protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>AL021476-2|CAA16318.1|  262|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1b protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 157 NRITAAEYKIAKPDTTESIINQNHRKMK 74
           NR+++A ++++K D  E   + N RK+K
Sbjct: 30  NRVSSARFQVSKTDEDEKTSDDNLRKLK 57


>Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 148 LSYCRVLAKRSLNDDSVSE------HPTESKLSSERLRLATSCSYICWVR 279
           L YCRVLA RS  D ++ E      +   +++    LRLA +   I +VR
Sbjct: 159 LDYCRVLAARSCRDHNLRESQLVDPNIVRTRILRNDLRLARAAREINFVR 208


>Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical
           protein M01B2.11 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 126 AILYSAAVILLPSTRETILKRRFRLGTPNGVEALV 230
           AI + +  + L     TIL+RR RL   N VEA V
Sbjct: 243 AICHLSLTVYLSIQLRTILRRRRRLSGTNNVEAAV 277


>Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 148 LSYCRVLAKRSLNDDSVSE------HPTESKLSSERLRLATSCSYICWVR 279
           L YCRVLA RS  D ++ E      +   +++    LRLA +   I +VR
Sbjct: 159 LDYCRVLAARSCRDHNLRESQLVDPNIVRTRILRNDLRLARAAREINFVR 208


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (werner's
            syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 255  LLLHLLGQNMSLRVFGEVLDELARRVHLGSNAPSAPSTLEMAPIYPDIDK 404
            L LHL   N+S +     L+  A RVHLGSN       +E   + PD ++
Sbjct: 951  LPLHLDKLNVSRKNIAMALN--AVRVHLGSNVAVLTPWVEAMGVVPDFNQ 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,857
Number of Sequences: 27780
Number of extensions: 224659
Number of successful extensions: 648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)