Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P09
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   112   2e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   112   2e-26
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.6  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   3.4  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (270), Expect = 2e-26
 Identities = 50/69 (72%), Positives = 54/69 (78%)
 Frame = +2

Query: 272 KTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFA 451
           K +RQP     K G   + SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFA
Sbjct: 46  KNKRQPYAVSEKAGH--QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFA 103

Query: 452 PTKPWRRWH 478
           PTK WR+WH
Sbjct: 104 PTKTWRKWH 112


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (270), Expect = 2e-26
 Identities = 50/69 (72%), Positives = 54/69 (78%)
 Frame = +2

Query: 272 KTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFA 451
           K +RQP     K G   + SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFA
Sbjct: 46  KNKRQPYAVSEKAGH--QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFA 103

Query: 452 PTKPWRRWH 478
           PTK WR+WH
Sbjct: 104 PTKTWRKWH 112


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 189 FVFSRAXPS-ENLTPRQRDVSTXYQLVERKRAASPLLRSAREAVSSNPAPSL 341
           F F+    S  N T     ++   Q + +  AA PLL +A      N  PSL
Sbjct: 220 FAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLLSNATSFFGENLTPSL 271


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 205 ALENTNGRGGAKHLRRPHSSP--NT-PTLK-VGLLTDSFRFISEVIPPKNT 65
           ALEN N      H R PHSS   NT P+ K  GL  D  R  S V  P  T
Sbjct: 295 ALENGNEEVSNNHARSPHSSRACNTIPSNKNDGLNDDHQRQDSSVAEPSPT 345


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 183 LPFVFSRAXPSENLTPRQRDVSTXYQLVER--KRAA 284
           LP +F+R    ENL P + +     QL E   +RAA
Sbjct: 175 LPVIFTRNWSDENLLPNENNCPRLVQLYEEFAERAA 210


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 102 NESVSSPTFSVGVFGEE*GRRRCFAPPLPFV-FSRAXPSENLTP-RQRDVSTXYQLVERK 275
           N + SS  FS G   +        A   P V FS A  SENLTP   + +++   LV+  
Sbjct: 161 NLATSSNPFSDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLASNTSLVQSF 220

Query: 276 RAAS 287
            +AS
Sbjct: 221 NSAS 224


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -3

Query: 456  VGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMT 316
            VG    PP    P  P P   +PP      +A   P P   A  + T
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVST 1251



 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 438  PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 331
            PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 438  PPRHMLPNAPCPDLWVPPP 382
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,418
Number of Sequences: 5004
Number of extensions: 40645
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)