Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P09
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 114 4e-26
07_01_0578 + 4295386-4296489,4297394-4297507 112 1e-25
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.052
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.052
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 32 0.28
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 30 0.85
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 30 0.85
05_06_0216 - 26453029-26454597 30 1.1
01_01_0219 + 1863478-1864041,1864459-1865109 30 1.1
12_02_0063 + 13098519-13099585,13099759-13099906 29 1.5
07_03_1721 - 29023979-29025295 29 1.5
01_01_0715 - 5542648-5543219,5543352-5543544 29 1.5
03_05_0847 + 28186873-28188147 29 2.0
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 29 2.0
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 29 2.6
03_01_0092 - 731069-731434,731569-733080 29 2.6
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 28 3.4
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 3.4
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 28 4.5
07_01_0368 + 2739908-2740320,2740437-2740816,2740893-2740977,274... 28 4.5
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 4.5
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 27 6.0
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 6.0
12_02_0634 + 21416205-21416954 27 7.9
10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033 27 7.9
10_08_0070 + 14637290-14637766,14639215-14639261,14640043-146401... 27 7.9
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 27 7.9
08_01_0490 + 4284192-4284740 27 7.9
06_03_0347 + 19783824-19784348 27 7.9
05_04_0142 - 18372751-18373338 27 7.9
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 27 7.9
03_05_1044 + 29908348-29908503,29909495-29909626,29910049-299103... 27 7.9
02_04_0457 + 23093020-23093343,23093798-23093806 27 7.9
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 27 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 114 bits (274), Expect = 4e-26
Identities = 51/67 (76%), Positives = 55/67 (82%)
Frame = +2
Query: 278 RRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 457
RRQP + G + SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPT
Sbjct: 51 RRQPYAVSRRAGH--QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 108
Query: 458 KPWRRWH 478
K WRRWH
Sbjct: 109 KIWRRWH 115
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 112 bits (270), Expect = 1e-25
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = +2
Query: 278 RRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 457
+RQP + G + SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPT
Sbjct: 52 KRQPYAVSRRAGH--QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 109
Query: 458 KPWRRWH 478
K WR+WH
Sbjct: 110 KTWRKWH 116
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 34.3 bits (75), Expect = 0.052
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +2
Query: 263 GRKKTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 442
GR++ + + R A+SW TGRA A + R R GG R A N G R
Sbjct: 13 GRRRELARAAASSVAANREGGGGAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.052
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 438 PPRHMLPNAPCPDLWVPPP 382
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 390 PPPRTRGIRATARPVPQDSALGLMTRPP 307
PPPRTR + PVP SA L +PP
Sbjct: 166 PPPRTRQVNPAPPPVPSPSAPPLPPQPP 193
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 30.3 bits (65), Expect = 0.85
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 450 ANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPP 307
A+ RPPR P P PPP + ARP PQ A+ + PP
Sbjct: 65 ASSRPPR---PPPPSTTTAPPPPAAPAV-TPARPPPQQPAVAVAAPPP 108
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 396 WVPPPRTRGIRATARPVPQDSALGLMTRP-PLLNAVGG 286
W PPP+ A P P SA + +P P+L+ GG
Sbjct: 585 WQPPPQLPSSAAGGNPNPSSSAFPYLKKPLPMLDTGGG 622
>05_06_0216 - 26453029-26454597
Length = 522
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 DPPCAAVNSGTSGGWSLPPSIVFFGGITSLIKRNESVSSPTFSV-GVF 143
DP + + + T GG LPP + +GG+T L+ + S+P + GVF
Sbjct: 190 DPRASRLRTLTLGGCVLPP-LHEYGGVTKLVLHGMAASTPAEAYEGVF 236
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 468 LHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLM 319
LH LV ++ RP P+ P +W PPP T P P + GLM
Sbjct: 47 LHSLVPSSSRPIMQPSPSPETPCVW-PPPLPSS-TPTPAPSPPSTPTGLM 94
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 174 APPLPFVFSRAXPSENLTPRQRDVSTXYQLVERKRAASPL 293
APP P+ ++A P PRQ V T Q +KR A+P+
Sbjct: 182 APP-PYPAAQAAPQAPAPPRQVPVITQQQAPPQKRPAAPV 220
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 465 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 346
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 438 PPRHMLPNAPCPDLWVPPPR--TRG-IRATARPVPQDSALGLMTRPP 307
PP +P AP P PPP T G RA + PVP + G PP
Sbjct: 146 PPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPP 192
>03_05_0847 + 28186873-28188147
Length = 424
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 165 RCFAPPLPFVFSRAXPSENLTPRQRD 242
R F PPLP + SR P + PR++D
Sbjct: 156 RSFPPPLPSMSSRDAPCLQMRPRRQD 181
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 151 SEVVAGASLPPSRLYFQGRXHQKT*PLVNVMSRRXINWSKENAPPAPYCVQQGRPCHQTQ 330
S ++GA+ P RL QG HQ + ++ + E APPAP RP +
Sbjct: 14 SAALSGAASRPGRLASQG--HQGKRAVAQPLAASAVT---EAAPPAPVVAPPARPVDAPR 68
Query: 331 RR 336
RR
Sbjct: 69 RR 70
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 477 CQRLHGLVGANIRPPRHMLPNAPC 406
C L+G VG +IRP + + PN C
Sbjct: 256 CSHLNGPVGHDIRPIKRLKPNQEC 279
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = -3
Query: 474 QRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRG---IRATARPVPQDSALGLMTRPPL 304
+ LHG A RPP L AP P PP G +R A P P PP+
Sbjct: 44 EALHGAAAATARPPPVSL--APAPVAVAPPATPAGLSALRVHASPPPPPVKQHAAPPPPV 101
Query: 303 LN 298
++
Sbjct: 102 MD 103
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 435 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 343
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -3
Query: 399 LWVPPPRTRGIRATA----RPVPQDSALGLMTRPP 307
L+VPPP G R T +P P SA + RPP
Sbjct: 100 LYVPPPLRSGGRRTVATRQQPAPARSATAFLPRPP 134
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 438 PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPPLLNAV 292
PPR +P + P L +PPP G + P S++ + PPL ++V
Sbjct: 43 PPRASIPVSSSPPL-LPPP-VAGSKPQLPPFSSSSSVASSSSPPLPSSV 89
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 465 HGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPP 307
HGL G N+P PPP ++G A P P+ + ++ RPP
Sbjct: 138 HGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNT-AVINRPP 189
>07_01_0368 +
2739908-2740320,2740437-2740816,2740893-2740977,
2741053-2741167,2741493-2741615
Length = 371
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/45 (44%), Positives = 20/45 (44%)
Frame = +2
Query: 287 PPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 421
PPTAFS GGRV S G G GGG SG G G
Sbjct: 51 PPTAFSYGGRV-----GSLGLGARRGMSGSSGGGGGRSSGGGIPG 90
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +2
Query: 260 IGRKKTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIP-----RVRGGGTHRSGQGAFGN 424
IG + T+ + G R + + E+ T A A+ R GG HR G+G G
Sbjct: 464 IGPRNTQENIKQLLAGGQRELVATGEAAATAAATAKATPPLARRTADGGAHR-GRGGGGA 522
Query: 425 MCRGGRMFAPTKPWRR 472
GG WRR
Sbjct: 523 EADGGARRGRGGGWRR 538
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -3
Query: 441 RPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPP 307
RPP+ PNAP P PR RG ++ D+ RPP
Sbjct: 93 RPPKPRDPNAPPPPPKPSSPRPRGRPPKSKDPISDAIPKSRGRPP 137
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 447 NIRPPRHMLPNAPCPDLWVPPPRTRGIRATARP-VPQDSALGLMTRPP 307
N P RH + P P + PPP R AT P VP S G +T P
Sbjct: 34 NPNPRRH---HRPSPSIPPPPPPQRPPAATVAPSVPDPSPSGHVTIRP 78
>12_02_0634 + 21416205-21416954
Length = 249
Score = 27.1 bits (57), Expect = 7.9
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Frame = +2
Query: 266 RKKTRRQPPTAFSK--GGRVIKPS--AESWGTGRAVARIP----RVRGGGTHRSGQGAFG 421
R+K R T F + G + P A SW GR R P R RGG RSG A G
Sbjct: 75 RRKVRPARATVFRRCSGEEEVIPGMRAASWSRGRWWRRRPALRGRGRGGRRRRSGGDATG 134
Query: 422 NMCRGGRM 445
R GR+
Sbjct: 135 R--RRGRV 140
>10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033
Length = 156
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 272 KTRRQPPTAFSKGGRVIK---PSAESWGTGRAVARIPRVR 382
K QPP++ +GG IK P + GT RA + I R R
Sbjct: 107 KNPEQPPSSDGRGGDKIKPRGPRSSRDGTDRASSSISRTR 146
>10_08_0070 +
14637290-14637766,14639215-14639261,14640043-14640106,
14641022-14641440,14641821-14642055
Length = 413
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +2
Query: 266 RKKTRRQPPTAFSKGGRVIKPSAESWGTG---RAVARIPRVRGGGT--HRSGQGAFGNMC 430
R R+PP A + GG+ + + +WG R + RG GT +R G G
Sbjct: 23 RSGDERRPPGAGADGGKAMASGSGAWGGAYEPRELKEEEGERGRGTEGYRVGTGHRDERR 82
Query: 431 RGGR 442
R GR
Sbjct: 83 RRGR 86
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 232 VNVMSRRXINWSKENAPPAPYCVQQGRPCHQTQ 330
V R ++W E APPAP +Q + H+ +
Sbjct: 451 VERQGRAPLSWDLEGAPPAPDSPEQSQEQHRDE 483
>08_01_0490 + 4284192-4284740
Length = 182
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/67 (26%), Positives = 24/67 (35%)
Frame = +2
Query: 263 GRKKTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 442
G + PP + G P + AV R P GG R G+G G +
Sbjct: 91 GELRLPASPPVILAAAGTT--PERGNGSKTNAVLRRPTPPGGAGPREGRGGRGGVIHAVA 148
Query: 443 MFAPTKP 463
AP +P
Sbjct: 149 DSAPQRP 155
>06_03_0347 + 19783824-19784348
Length = 174
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 266 RKKTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 436
R RR P A G V + G A+IP G+ R G G ++C G
Sbjct: 51 RHVRRRAPVVAAEGAGSVGGREDDGRGVADVAAKIPEFAYAGSARHGGGGECSVCLG 107
>05_04_0142 - 18372751-18373338
Length = 195
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 263 GRKKTRRQPPT---AFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQ 409
G + RRQPPT A S SA S +GR V + GGG + G+
Sbjct: 26 GALRRRRQPPTSGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGR 77
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 342 QDSALGLMTRPPLLNAVGGWRRVFF 268
+DS++ RPPL A G W+ F
Sbjct: 23 EDSSVDYQGRPPLRAATGSWKAAMF 47
>03_05_1044 +
29908348-29908503,29909495-29909626,29910049-29910364,
29910447-29910510,29910614-29910727,29910806-29910968,
29911166-29911316,29911403-29911986,29912313-29912542,
29912791-29913045,29913293-29913590
Length = 820
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 100 RFISEVIPPKNTIDGGKDHPPLVPEFTAAHG 8
R IS V P +DG PP+ F +A G
Sbjct: 586 REISNVFQPMRKMDGASKEPPVTKMFLSADG 616
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 308 GGRVI--KPSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 421
GG V+ + S W G A A VRGGG RSG G G
Sbjct: 71 GGVVLGRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 144 GEE*GRRRCFAPPLPFVFSRAXPSENLTPRQRDVSTXYQLVERKRAASPLLRSAREAVSS 323
GE+ ++R PP P A P + Q+ +S +L KRA +++ ++ ++
Sbjct: 272 GEKEKKKRSKKPPRPPRPPSASPLD--AADQKLISELSELASLKRARIERMKALKKMKNT 329
Query: 324 NPAPSLG 344
PA S+G
Sbjct: 330 KPASSIG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,570
Number of Sequences: 37544
Number of extensions: 416918
Number of successful extensions: 1762
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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