Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P09
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 112 1e-25
U41559-5|AAC24258.1| 217|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 27 5.3
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 27 7.0
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 7.0
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 7.0
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 27 7.0
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 27 7.0
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 27 7.0
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 9.3
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 112 bits (269), Expect = 1e-25
Identities = 51/70 (72%), Positives = 57/70 (81%)
Frame = +2
Query: 269 KKTRRQPPTAFSKGGRVIKPSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF 448
++ RRQ +K G+ + SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MF
Sbjct: 44 RRNRRQAHAVNTKAGK--QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMF 101
Query: 449 APTKPWRRWH 478
AP K +RRWH
Sbjct: 102 APLKVFRRWH 111
>U41559-5|AAC24258.1| 217|Caenorhabditis elegans Hypothetical
protein C26B2.2 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.57
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +1
Query: 106 SLSVARPLVSVYSEKSEVVAGASLPPSRLYFQGRXHQKT*PLVNVMSRRXINWSKENAPP 285
+LS++ + SEKSE+ + ++ P++ +GR +K +V++ I + ++ PP
Sbjct: 88 NLSLSSSATNFNSEKSEIGSKITMNPAKQVLKGRNTRKKRSMVDLSQINKI-FGRDYNPP 146
Query: 286 AP 291
AP
Sbjct: 147 AP 148
>Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical
protein F46A8.8 protein.
Length = 236
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 232 RGVRFSDGXALENTNGRGGAKHLRRPHSSPNTP 134
+G RF DG + + RGG +H RP P P
Sbjct: 55 KGPRFDDGSFEDYSGRRGGGRH--RPPRPPRPP 85
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 444 IRPPRHMLPNAPCP-DLWVPPPRTRGIRATARPVPQDSALGLMTRPPLLNAV 292
+ PP+ +P P + PPP T A + P P S L + P + A+
Sbjct: 281 VNPPQPAVPPKPAKISVADPPPSTIAPAAPSAPAPAPSQLNPTSTSPTMPAI 332
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 429 HMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPPLLN 298
H +AP PPPR R + TA PQ +RPP N
Sbjct: 469 HRGHSAPPEHFRQPPPRERNMVDTAPNTPQSMQRTPKSRPPHRN 512
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 462 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 370
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 462 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 370
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +3
Query: 9 PCAAVNSGTSGGWSLPPSIVFFGGITSLIKRNESVSSPTFSVG 137
PC + G G WS P++ +++ + SP F G
Sbjct: 50 PCTSAIWGDWGAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSG 92
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +3
Query: 9 PCAAVNSGTSGGWSLPPSIVFFGGITSLIKRNESVSSPTFSVG 137
PC + G G WS P++ +++ + SP F G
Sbjct: 50 PCTSAIWGDWGAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSG 92
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +3
Query: 9 PCAAVNSGTSGGWSLPPSIVFFGGITSLIKRNESVSSPTFSVG 137
PC + G G WS P++ +++ + SP F G
Sbjct: 50 PCTSAIWGDWGAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSG 92
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +3
Query: 9 PCAAVNSGTSGGWSLPPSIVFFGGITSLIKRNESVSSPTFSVG 137
PC + G G WS P++ +++ + SP F G
Sbjct: 50 PCTSAIWGDWGAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSG 92
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 429 HMLPNAPCPDLWVPPPRTRGIRATARPVPQDSALGLMTRPPLLN 298
H +AP PPPR R + TA PQ +RPP N
Sbjct: 469 HRGHSAPPEHFRQPPPRERNMVDTAPNTPQSMQRTPKSRPPHRN 512
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 193 TNGRGGAKHLRRPHSSPNTP 134
TNG GGA H R+ H+ ++P
Sbjct: 117 TNGGGGAAHRRKKHNDLSSP 136
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 193 TNGRGGAKHLRRPHSSPNTP 134
TNG GGA H R+ H+ ++P
Sbjct: 179 TNGGGGAAHRRKKHNDLSSP 198
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 368 IPRVRGGGTHRSGQGAFGNMCRGG 439
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,748
Number of Sequences: 27780
Number of extensions: 259273
Number of successful extensions: 839
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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