Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P08
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 34 0.022
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.20
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 31 0.20
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 31 0.20
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.61
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.9
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 27 2.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.6
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 10.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 10.0
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 33.9 bits (74), Expect = 0.022
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 230 PNVTTVRSKISSTSAEQILKLTITTQTSVNITEKNDEPELMRSNINIDRSKNNIFKGISM 409
P++T+ KI ST+ K+ TT SV+ ++ + + + S+ + +
Sbjct: 406 PSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYEHSEPFKVSSVPL 465
Query: 410 TITEYGTPTSTTARAKFVTAPA--SNTEEYHSIQASIVKETPISIPFTT 550
T + + + ++A + +T + SNT + S+Q+S + +S+P +T
Sbjct: 466 TSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSST 514
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 30.7 bits (66), Expect = 0.20
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Frame = +2
Query: 185 TSIYNRTLIPLIVDEPNVTTVRSKISSTSAEQILKLTITTQTSVNITEKNDEPELMRSNI 364
TS+ + T + V P TT+ + +S + I + +T++ T+ + P ++ S +
Sbjct: 30 TSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQSHSSPVIVVSTV 89
Query: 365 NIDRSKNNIFKGISMTITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPIS--I 538
++ T T +TT A+ +T S T E A V ET S +
Sbjct: 90 GT----------VTETTISGSTEYTTTIPAEGIT---SGTVEIVEPTAGTVTETITSGTL 136
Query: 539 PFTTIEVRKTETIRNT 586
PFTT + + T+ T
Sbjct: 137 PFTTTLAQASGTVSGT 152
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +2
Query: 182 YTSIYNRTLIPLIVDEPNVTTVRSKISSTSAEQILKLTITTQTSVNITEKNDEPELMRSN 361
YT+ + ++ L+ D+P++ ++ S EQ +LTIT Q ++ EK+ E +N
Sbjct: 144 YTAHLEQLMVALLGDDPSLPGPPHEVFGISPEQCRELTITVQEAL---EKSKEFIRCWTN 200
Query: 362 INIDRSKNNIFK 397
+ +D + FK
Sbjct: 201 VRMDLLRAIRFK 212
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 30.7 bits (66), Expect = 0.20
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Frame = +2
Query: 185 TSIYNRTLIPLIVDEPNVTTVRSKISSTSAEQILKLTITTQTSVNITEKNDEPELMRSNI 364
TS+ + T + V P TT+ + +S + I + +T++ T+ + P ++ S +
Sbjct: 30 TSVQSDTTNQVSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQSHSSPVIVVSTV 89
Query: 365 NIDRSKNNIFKGISMTITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPIS--I 538
++ T T +TT A+ +T S T E A V ET S +
Sbjct: 90 GT----------VTETTISGSTEYTTTIPAEGIT---SGTVEIVEPTAGTVTETITSGTL 136
Query: 539 PFTTIEVRKTETIRNT 586
PFTT + + T+ T
Sbjct: 137 PFTTTLAQASGTVSGT 152
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.1 bits (62), Expect = 0.61
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +2
Query: 158 ATEPTRNVYTSIYNRTLIPLIVDEPNVTTVRSKISSTSAEQILKLTITTQTSVNITE--- 328
A+ PTR+ + + T+ +V P + + S + S EQ+ ++T + S+ +
Sbjct: 330 ASSPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVKPVSNEQVEQVT-EVELSIPVPSIQE 388
Query: 329 -KNDEPELMRSNINIDRSKNNIFKGISMTITEYGTPTSTTARAKFVTAPAS 478
++ +P L S++ + F+ + +T +S A + PA+
Sbjct: 389 AESQKPVLTGSSMRRPSVTSPTFEVAARPLTSMDVRSSHNAETEVQAIPAA 439
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 230 PNVTTVRSKISSTSAEQILKLTITTQTSVNITEKN-DEPELMRSNINIDRSKNNIFKGIS 406
P +++ S +++S+ T ++ S +IT + + S++ + ++ S
Sbjct: 104 PTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSS 163
Query: 407 MTITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPISIPFTTIEVRKTETIRNT 586
T TPTS+ + + ASN+ S+ +S + T + T + T +
Sbjct: 164 TNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSA---TATSSSLSSTAASN 220
Query: 587 EATMTILQQ*NLN 625
AT + L +LN
Sbjct: 221 SATSSSLASSSLN 233
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 356 SNINIDRSKNNIFKGISMTITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPIS 535
S+ + S + F G S + T+TT + + T+P T + S E IS
Sbjct: 529 SSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETIS 588
Query: 536 IPFTTIEVRKT 568
TT V ++
Sbjct: 589 TVSTTSTVSES 599
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 466 CNKFCPCSG*CRGSVFCNSHTYPLK 392
CN FC CS C V T PL+
Sbjct: 307 CNSFCSCSMECPNRVVQRGRTLPLE 331
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 TQTSVNITEKNDEPELMRSNINIDRSKNNIFKGISMTITEYGTPTSTTARAKF-VTAPAS 478
T+ S+N E D E ++ I G + T Y TPTS++ + F +A S
Sbjct: 35 TKISLNQLEGRDSQEELQRRQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPS 94
Query: 479 NTEEYHSIQASIVKETPISIPFTT 550
T Y S +S +P +T
Sbjct: 95 ETNSYSSPVSSYSDPATSQLPSST 118
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 PNVTTVRSKISSTSAEQILKLTITTQTSVNITEK 331
P++T V S ++TSA Q+ +T+T + + +K
Sbjct: 162 PSITPVDSVNTTTSAIQVPSVTLTAPAPLGVDQK 195
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Frame = +2
Query: 242 TVRSKISSTSAEQILKLTITTQTSVNITEKN---DEPELMRSNINIDRSKNNIFKGISMT 412
T STS + + Q S I+ + + P + S + N +
Sbjct: 285 TTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344
Query: 413 ITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPIS 535
I+ PT TT F NT + ++ TPI+
Sbjct: 345 ISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPIT 385
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 YDYYRIRNPD-INHCTGKICYSTSFKHRRISFYTSFYC*GN 525
YDY P+ +NH + + +TSF +S+ + YC GN
Sbjct: 189 YDY---GTPEFMNHLSTPMVMATSFALTTLSWINALYCNGN 226
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +2
Query: 356 SNINIDRSKNNIFKGISMTITEYGTPTSTTAR------AKFVTAPASNTEEYHSIQASIV 517
S + I+R +IF G + YG + T+ R + +T P+ + E S Q+ +
Sbjct: 406 SPLGINRIFGSIFMGKTRQDRVYGMYSWTSDRWVKSKIEESLTGPSFSRYELQSAQSVLP 465
Query: 518 KETPISI 538
K+ P+S+
Sbjct: 466 KDLPVSV 472
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 161 TEPTRNVYTSIYNRTLI-PLIVDE--PNVTT-VRSKISSTSAEQILKLTITTQTSVNITE 328
T P T+ T+I P +V P V T + + +T+ IL + + +T++NI
Sbjct: 270 TTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVVTTTPMVILVMAVVMETTINIVG 329
Query: 329 KND 337
ND
Sbjct: 330 NND 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,273
Number of Sequences: 5004
Number of extensions: 40999
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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