Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P08
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    29   3.4  
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732...    29   3.4  
12_01_0546 + 4329200-4329472                                           29   4.5  

>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 547 CKRNRYWCFLNNRSLYRMI 491
           CK + YW  LNNRSL+ ++
Sbjct: 220 CKSSLYWTVLNNRSLFTVL 238


>03_02_0312 -
           7326092-7326148,7326415-7326540,7327744-7327821,
           7327916-7328178,7328699-7328741,7329581-7329632,
           7329705-7329871,7330135-7330194,7330291-7330374,
           7330654-7330758,7330840-7330899,7330976-7331032
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 398 GISMTITEYGTPTSTTARAKFVTAPAS 478
           G++M +  +GTPTS     K + APAS
Sbjct: 254 GVNMGMDYWGTPTSVPMHNKVIAAPAS 280


>12_01_0546 + 4329200-4329472
          Length = 90

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 479 NTEEYHSIQASIVKETPISIPFTTIEVRKTETIRNTEATMTIL 607
           N    H+I+A I ++TP+ I F       ++T+R  E+ ++ L
Sbjct: 20  NRHRSHNIEAYIRQDTPLDINFRDTHGVSSDTVRRDESAISDL 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,624
Number of Sequences: 37544
Number of extensions: 205819
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)