Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P08
         (674 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.     31   2.8  
L07518-1|AAB61945.1|  505|Homo sapiens mucin protein.                  31   4.9  
AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.     30   6.5  
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   8.6  

>AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.
          Length = 338

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
 Frame = +2

Query: 233 NVTTVRSKISSTSAEQILKLTITTQTSVNITEKNDEPELMRSNINIDRSKNNIFKGISMT 412
           ++TT+ S  ++T+    L   I + T V  TE+        +NIN     + +   +  T
Sbjct: 172 SMTTMTSWPTATNTLSSLTTNILSSTPVPSTERTTSHT---TNIN---PVSTLVTTLPTT 225

Query: 413 ITEYGTPTSTTAR--AKFVTAPASNTEEYHSIQASIVKETPISIPFTTIEVRKTETIRNT 586
           IT   TPTS T    +   T   S TE  +S   +    +  S+P T+  V  TET + T
Sbjct: 226 ITR-STPTSETTYPISSTSTVTESTTEITYSTTMTETSSSATSLPLTSPLVSTTETAK-T 283

Query: 587 EATMTI 604
             T+ +
Sbjct: 284 PTTILV 289


>L07518-1|AAB61945.1|  505|Homo sapiens mucin protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = +2

Query: 284 LKLTITTQTSVNITEKNDEPELMRSNINIDRSKNNIFKGISMTITEYGTPTSTTARAKFV 463
           LK T +T T+  IT          S+ + +++  ++    S T      PTSTT      
Sbjct: 40  LKATGSTHTAPPITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVAPTSTTTITPNP 99

Query: 464 TAPASNTEEYHSIQASIVKETPISIPFTT 550
           T+  + T   H+  A+  +  P   PFTT
Sbjct: 100 TSTRTRTPVAHTNSATSSRPPP---PFTT 125


>AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 410 TITEYGTPTSTTARAKFVTAPASNTEEYHSIQASIVKETPI 532
           +IT   TPT+T      +T+P + T  + S+ + I+  TP+
Sbjct: 5   SITSAITPTNTVTSMTTMTSPPTTTNCFTSLSSKILSSTPV 45


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 8/153 (5%)
 Frame = +2

Query: 170  TRNVYTSIYNRTLIPLIVDEPNVTTVRSKISSTSAEQILKLT---ITTQTSVNITEKNDE 340
            T  + TS    T        P  +T  + I ST++      T    T+ TS   T     
Sbjct: 632  TTTLVTSSITSTTQTSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTST 691

Query: 341  PELMRSNINIDRSKN-----NIFKGISMTITEYGTPTSTTARAKFVTAPASNTEEYHSIQ 505
            P+   S+     + +      I    + TI+   T T++   A   +AP S +    +  
Sbjct: 692  PQTTTSSAPTSSTTSAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPTSTSSAPTTNT 751

Query: 506  ASIVKETPISIPFTTIEVRKTETIRNTEATMTI 604
             S    +  S P T+     T +  +T  T TI
Sbjct: 752  TSAPTTSTTSAPITSTISAPTTSTTSTPQTSTI 784


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,255,330
Number of Sequences: 237096
Number of extensions: 1271479
Number of successful extensions: 7211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7211
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)