Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P08
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.38 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.66 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.66 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.66 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.66 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
 Frame = +2

Query: 383 NNIFKGISMTITEYGTPTSTTA------RAKFVTAPASNTEEYHSIQASIVKETPISIPF 544
           +   + +   + E   PTSTT       R +     A+N      + A   + +P SIP+
Sbjct: 74  DTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPY 133

Query: 545 TTIEVRKTETIR--NTEATMTILQQ*NLNQKE 634
            T    KTE+I+   T+     +Q  + ++KE
Sbjct: 134 ATRAEIKTESIQPETTKVDTREVQPHDASEKE 165


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  PRLLK-IQLNYYYS*LTEQNSNNTH*NKYEPNCYHHSN 162
           P+++  +  NY YS     N+NN + N Y+   Y++ N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  PRLLK-IQLNYYYS*LTEQNSNNTH*NKYEPNCYHHSN 162
           P+++  +  NY YS     N+NN + N Y+   Y++ N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  PRLLK-IQLNYYYS*LTEQNSNNTH*NKYEPNCYHHSN 162
           P+++  +  NY YS     N+NN + N Y+   Y++ N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  PRLLK-IQLNYYYS*LTEQNSNNTH*NKYEPNCYHHSN 162
           P+++  +  NY YS     N+NN + N Y+   Y++ N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 106 NSNNTH*NKYEPNCYHHSNRAH 171
           N NN + N    N  HHS++ H
Sbjct: 523 NQNNQNDNNRNDNQVHHSSKLH 544


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 97  TEQNSNNTH*NKYEPNCYHHSNRAHTKCIYF 189
           T  N+NN + N Y    Y+++N  + K +Y+
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNYKKLYY 119



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 11  FYNYVYRNNEDSNYR 55
           + NY Y NN  +NY+
Sbjct: 101 YNNYNYNNNNYNNYK 115


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 76  NYYYS*LTEQNSNNTH*NKYEPNC 147
           NY Y+      +NN + N Y  NC
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNC 351


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 258 IFDLTVVTLGSSTISGINVLLYIEVYTFRVGS 163
           +F   VV + S  +  + +++YI V+   VGS
Sbjct: 179 VFVAGVVFIVSGLLMLVGMVMYISVFKAEVGS 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,658
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)