Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P07
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 30 0.18
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 1.2
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 1.6
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.2
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.2
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 2.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 2.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 5.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 5.0
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 5.0
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 6.7
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 8.8
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 8.8
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 8.8
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 30.3 bits (65), Expect = 0.18
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 136 SDDDCYGNIAQKLQLIKNKYQKDKP---DNSLNDSADFSTSNKIVSDSSNASFILIEDEN 306
S D+ G + L + NK +K KP D+ S NK++ +S N + +EDEN
Sbjct: 11 SMDELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKVI-ESLNEMEVEMEDEN 69
Query: 307 VPLGDSEE 330
D +E
Sbjct: 70 ENENDEQE 77
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 325 EEVTIDSIIAKNIKKRITRSTAKQ-LQIDVLVEKPSRRNTKLTPVENDTVPNAKSTTEKT 501
E + D+I+ N + S + L++ VE S +NTKL VEND + K+ TE
Sbjct: 834 ENASEDTILESNFRNHSNPSVRRSNLRVGKTVE--SVQNTKLKSVEND---SGKAETETV 888
Query: 502 RSN 510
N
Sbjct: 889 GKN 891
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +1
Query: 205 KPDNSLNDSADFSTSNKIVSDSSNAS-----FILIEDENVPLGDSEEVTIDSIIAKNIKK 369
+PD L+ + DF+ +NKI + SS A+ + E + +P+G E S++ +
Sbjct: 559 QPDRYLDMNFDFNDTNKINNPSSTANQTRHFHSVSEIKKLPMGTDE--LEKSMVRPSTAM 616
Query: 370 RITRSTAKQLQIDVLVEKPSRRNTK 444
I R + ID + NTK
Sbjct: 617 YINRQNENAVSIDKSRDLQGTVNTK 641
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 181 IKNKYQKDKPDNSLNDSADFSTSNKIVSDSSNASFILIED 300
+K K + P NS NDSA + + I S++ S + +E+
Sbjct: 602 VKAKKTRRAPKNSENDSATKTETANITSEAPTTSEVTLEN 641
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 205 KPDNSLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTID---SIIAKNIKKRI 375
K + ++D + SN+ V + SF+ I D L D+ +D S+ KKR+
Sbjct: 261 KSSSDVSDLSSLPQSNRYVISEEDRSFLNIWDSGGELSDASSSDLDEEFSLFIPRHKKRV 320
Query: 376 TRSTAKQLQIDVLVEKPS 429
S K+L ++ + S
Sbjct: 321 W-SREKRLLSEMAITNHS 337
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/95 (21%), Positives = 41/95 (43%)
Frame = +1
Query: 211 DNSLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTIDSIIAKNIKKRITRSTA 390
DN +ND DF T + + D ++ ++E E +++ ++ ++ + I+ T
Sbjct: 442 DNDVNDLLDFETEREDIDDLTDE---VMETEENEAAEADYPGVNRNTRQDDVQDISMETE 498
Query: 391 KQLQIDVLVEKPSRRNTKLTPVENDTVPNAKSTTE 495
Q + D E + N P + VP + T+
Sbjct: 499 SQNETD---ESQNTENVDYNPQTHTPVPIPTTATQ 530
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 488 VLLAFGTVSFSTGVSFVFLLDGFSTR 411
+++AFG +S STG + VF L+ TR
Sbjct: 337 LVMAFGALSGSTGATIVFPLNVIRTR 362
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +1
Query: 118 KMNSSDSDDDCYGNIAQKLQLIKNKYQKDKPDNSL-NDSADFSTSNKIVSDSSNASFILI 294
K +DS DD G ++L L + +KDK L ND D S + + V + + +
Sbjct: 88 KKKLNDSSDDIEGKYFEEL-LAEEDEEKDKDSAGLINDEEDKSPAKQSVLEERTSQEDVK 146
Query: 295 EDENV--PLGDSEEVTIDSIIAKNIKKRI 375
+ V L + E + ++ N+ R+
Sbjct: 147 SEREVAEKLANELEKSDKTVFVNNLPARV 175
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 166 QKLQLIKNKYQK---DKPDNSLNDSADFSTSNKIVSDSSNASFILIEDENVPL 315
+KL+L KN +K +KP + + FST+ S SS +S I D N+ L
Sbjct: 60 EKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKSAKSFSSTSSNI---DSNLDL 109
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 109 DCIKMNSSDSDDDCY-GNIA--QKLQLIKNKYQKDKPDNSLNDSADFSTSNKIVSDSSNA 279
D I++NS + + DCY G +A Q I+ +K K + D DF T SSN
Sbjct: 598 DNIELNSKEREHDCYEGTLAVPQVNTEIRKSSRKQKAQRFIRD--DFDT--VFFQSSSNP 653
Query: 280 SF 285
++
Sbjct: 654 NY 655
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 298 DENVPLGDSEEVTIDSIIAKNIKKR----ITRSTAKQLQIDVLVEKPSRRNTKLTPVEND 465
+ENV + EV D + +K +KK+ T TA + + ++E + K+ VE
Sbjct: 229 EENVTVTKPVEVATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIED-KVPKVDEVEEV 287
Query: 466 TVPNAKST 489
P AK T
Sbjct: 288 HSPEAKVT 295
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 169 KLQLIKNKYQKDKPDNSLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTID 342
K ++ K +K KP++S N + + + S+SSNA ++V + D V D
Sbjct: 57 KKSTVRRKLRKSKPNSSSNQVSSRTRALTKRSNSSNAIIKANNQDSVYVSDWTNVHRD 114
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 417 HENVNLKLFCRRSCNTFLNVFSYN 346
+E+ ++L C+++CN NVF ++
Sbjct: 1086 NESFEVELPCKQTCNFVANVFDWD 1109
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 148 CYGNIAQKLQLIKNKYQKDKPDNSLNDSADFSTSNKIVS---DSSNASFILIED 300
CYG + L+ + +KD ++ LN S N S S+N F + D
Sbjct: 814 CYGACVYNVGLLDEEKRKDLANSDLNSSPKLIQGNDSRSAHESSANKLFSFVHD 867
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 24.6 bits (51), Expect = 8.8
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Frame = +1
Query: 127 SSDSDDDCYGNIAQKLQLIKNKYQKDKPDNSLNDSADF---STSNKIVSDSSNASFILIE 297
+S S YG+IAQ I +K P +S + S+ S ++ SS+A+F +
Sbjct: 348 ASISSKRSYGDIAQDCSYISSKTNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQS 407
Query: 298 DENVPLG-DSEEVTIDSIIAKNIKKRITRSTAKQLQIDVLVEKPSRRNTKLTPVENDTVP 474
+ P+G ++E + + ++ I + L D + E T + + T
Sbjct: 408 NGVEPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLN-DKIAELRDAVPTLRSGYNSTTAD 466
Query: 475 NAKST 489
K T
Sbjct: 467 ELKGT 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,200
Number of Sequences: 5004
Number of extensions: 33413
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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