Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P07
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.3
03_01_0331 - 2609012-2609365,2609579-2609920,2610009-2610257,261... 29 1.7
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 29 2.9
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 29 2.9
05_06_0272 - 26844819-26845035,26846663-26846670 28 3.8
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 28 5.1
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 27 6.7
02_04_0061 + 19361562-19363130 27 6.7
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 27 8.8
02_02_0205 + 7769137-7770153 27 8.8
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 154 GNIAQKLQLIKNKYQKDKPDNSLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEV 333
G I K ++K + +K +D S + K+V ++S+A ++ N GD +
Sbjct: 248 GKILTKSGVLKLLPKNNKVAKETSDGNPRSKNTKVVGETSDAKILMKNKANRESGDDKAP 307
Query: 334 TIDSI-IAKNIKKRITRSTAKQLQIDVLVEKPSRRNTKLTPVENDTVPNAKSTTEK 498
++ + + K ++R+T + L+ + + ++ + + K TEK
Sbjct: 308 KNCTVNLETSAGKILSRNTKEDLKTSDVCRQDKEKSDAIDVSQKQGADGEKRITEK 363
>03_01_0331 -
2609012-2609365,2609579-2609920,2610009-2610257,
2610748-2610750
Length = 315
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 226 DSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTIDSIIAKN 360
D A + ++ ++++DSS +S +++E VP+ +E I+ I+A N
Sbjct: 35 DLAYWESAARMIADSSRSSKVVVEKSTVPVKTAE--AIEKILAHN 77
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 289 LIEDENVPLGDSEEVTIDSIIAKNIKKRITRSTAKQLQIDVLVEKPSRRNTK 444
+++ ++PL S E+ +S I + ++KR+ R T +Q + EK + + K
Sbjct: 446 VVDSNDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQ--EIAEKEDKEDYK 495
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +1
Query: 202 DKPDN--SLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTIDSIIAKNIKKRI 375
++PD + ND + +T + D A+ ED V D + D + +++
Sbjct: 1166 EEPDKKTAANDPVEDATVEE--PDKKTAANDPAEDATVEEPDKKTAANDHVEDATLEEPD 1223
Query: 376 TRSTAKQLQIDVLVEKPSRRNTKLTPVENDTVPNAKSTTEKTRSN 510
++ A DV VE+P ++ PVE + +P + T + T +N
Sbjct: 1224 KKTAANDHVEDVTVEEPDKKTAANDPVE-EVIP--EETDKNTTTN 1265
>05_06_0272 - 26844819-26845035,26846663-26846670
Length = 74
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 130 SDSDDDCYGNIAQKLQLIKNKYQKDKPDNSLND 228
+ SDDD G+ + LQ I N+Y + N ND
Sbjct: 37 NQSDDDSDGDFEEALQRISNEYAESSLKNYNND 69
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 160 IAQKLQLIKNKYQKDKPDNSLNDSADFSTSNKIVSDSSNASFILIEDENVPLGDSEEVTI 339
I ++ L ++ P+ + ND D + +NKI S ++ F LIE +P+ S +
Sbjct: 31 ILRRALLARSASTSRAPEETSNDQQDKNDTNKI-SRKTSRGFDLIECHMLPISQSTKSHG 89
Query: 340 DS 345
DS
Sbjct: 90 DS 91
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 289 LIEDENVPLGDSEEVTIDSIIAKNIKKRITRSTAKQLQIDVLVEKPSRRNTK 444
+++ ++PL S E+ +S I + ++KR+ R T I+ + EK + + K
Sbjct: 696 VVDSNDLPLNVSREILQESRIVRIMRKRLVRKTFD--MIEEISEKDDKEDYK 745
>02_04_0061 + 19361562-19363130
Length = 522
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 390 CRRSCNTFLNVFSYNTVYCYLL 325
C R+C+ + V+S T YCYL+
Sbjct: 396 CARNCSCWGAVYSNGTGYCYLM 417
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 262 SDSSNASFILIEDENVPLGDSEEVTIDSIIAKNI 363
SD L D NVPL DS+++T D+ I ++
Sbjct: 13 SDLKGKKVFLRADLNVPLDDSQKITDDTRIRASV 46
>02_02_0205 + 7769137-7770153
Length = 338
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 500 VFSVVLLAFGTVSFSTGVSFVFLLDGFSTRTSI*SCFAVDLVIRFLMFLAI 348
VF + L VS G V + +G STR +C AV+ V+R +M A+
Sbjct: 11 VFLLGALLLVAVSCHGGFGGVGVAEGLSTRYYAKTCPAVESVVRSVMARAV 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,032
Number of Sequences: 37544
Number of extensions: 167580
Number of successful extensions: 451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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