Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P06
(236 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 25 1.0
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 25 1.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 1.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 2.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 2.3
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 24 2.3
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 24 2.3
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 3.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 4.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 23 5.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 23 5.4
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 23 5.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 23 7.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 7.1
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 7.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 23 7.1
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 22 9.4
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 22 9.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 22 9.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 22 9.4
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 1.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 48 APWCGHCK 55
Score = 25.4 bits (53), Expect = 1.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 382 APWCGHCK 389
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 96 NTKHNTRIFSKFTLKLSGLTLTKAP 22
N KH+ +FS F + L L K P
Sbjct: 423 NNKHHRMLFSNFAAQTEALMLGKTP 447
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 231 SNFTLSLFSPDASFSRTTPENSSSFHFIVSFAST 130
S+ + S FS + + TTP +SSS IVS A T
Sbjct: 214 SSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKT 247
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 231 SNFTLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLK 52
S T LF + ++ N + F S A QPLQA+ N N +FS T +
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLFGGSQAGQQQQPLQASIDQNPYGNNPLFSSTTSQ 652
Query: 51 LS 46
++
Sbjct: 653 VA 654
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 213 LFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSK 64
L P A S P++SSS H++ + L+ P + NT + SK
Sbjct: 1163 LILPKAHLSDGLPDSSSSLHWV----NKLINPSHSVIFFNTDDILGVESK 1208
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.2 bits (50), Expect = 2.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -3
Query: 228 NFTLSLFSPDASFSRTTPE-----NSSSFHFIVSFASTLVQPLQAT-TMHNTKHNTR 76
N LS+F P A + + PE N++S + VS +L Q TM+ TKHNTR
Sbjct: 323 NQRLSIFLPSALNNISKPESTDRPNTASGNQSVSAWFSLEPMGQINLTMNFTKHNTR 379
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -1
Query: 146 CHSQAPWCSHCKLPPCIIPNTIHAFSQNLL*SYPD*LLRR 27
C S++ + +HC + + + F+ N YPD +L +
Sbjct: 100 CESKSMYTTHCVIHVAVPQDLCRKFNSNKEQPYPDDVLEQ 139
>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 152 SSCHSQAPWCSHCKLPP 102
++CHS PW S KL P
Sbjct: 83 TNCHSIVPWKSSSKLIP 99
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 122 CTRVLANDTMKWKLELFSGVVLEKDASGENKLN 220
C + A +++K +F+G +E+DA GE +++
Sbjct: 658 CDVLKAKESVKDSEGMFAGEEVEEDAFGETEMD 690
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 171 NSSSFHFIVSFASTLVQPLQATTMH 97
+SS F +VSF + QPL + H
Sbjct: 508 DSSKFDTVVSFLLSPTQPLYVSAFH 532
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 23.0 bits (47), Expect = 5.4
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3
Query: 231 SNFTLSLFSP--DASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFT 58
S F SL P +TP +++F+ S + + L +T + +T + + T
Sbjct: 107 SKFERSLARPLCITPIDSSTPTKTATFY--TSSTTENLDELNFSTEELSSFDTTLLNSDT 164
Query: 57 LKLSGLTLTKAPRAEFM 7
KLSGL + EF+
Sbjct: 165 SKLSGLDDSSFMEEEFV 181
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 183 TTPENSSSFHFIVSFASTLVQPL 115
T P+N SS F +TL++PL
Sbjct: 10 TKPQNHSSTLEFYDFVTTLLEPL 32
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 23.0 bits (47), Expect = 5.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC +CK
Sbjct: 57 APWCGYCK 64
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 105 TMHNTKHNTRIFSKFTLKLSGLTLTKAPRA 16
T N + R+ SK KLS L T +PR+
Sbjct: 316 TFLNDLYAFRLSSKHWYKLSDLPFTPSPRS 345
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 193 RCIWRKQTQC 222
RCIWRK +C
Sbjct: 163 RCIWRKGKKC 172
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 152 KWKLELFSGVVLEKDASGENKL 217
KWK E+ V E+ +GE K+
Sbjct: 189 KWKEEMRQRVASEEQQAGEEKM 210
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -1
Query: 128 WCSHCKLPPCIIPNTIHAFSQNLL 57
W S C++ C I ++ +NL+
Sbjct: 223 WISKCEISKCTTTEDIFSYLKNLI 246
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = -1
Query: 134 APWCSHCK 111
A WC HCK
Sbjct: 48 ATWCGHCK 55
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 22.2 bits (45), Expect = 9.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 231 SNFTLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATT 103
SN+ + F+ S PENS FI +T Q L+ T
Sbjct: 103 SNYYHNAFTTPYETSVLHPENSYLTQFIADAPTTTSQRLKGLT 145
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 195 SFSRTTPENSSS 160
SF+ TTPEN+S+
Sbjct: 359 SFANTTPENTST 370
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 38 VNPDNFRVNFEK 73
++PDNF VN E+
Sbjct: 2129 IDPDNFEVNIEQ 2140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 965,117
Number of Sequences: 5004
Number of extensions: 16363
Number of successful extensions: 59
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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