Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P06
(236 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1195 - 25149891-25151402,25152194-25152493 29 0.53
04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708 29 0.70
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 0.70
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 28 0.92
07_03_1266 - 25310196-25310400,25310558-25310784 27 2.1
09_04_0375 - 17055024-17055956,17056045-17056296 27 2.8
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 26 4.9
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 25 6.5
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 25 6.5
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 25 6.5
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 25 6.5
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 25 6.5
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 25 6.5
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 25 6.5
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 25 6.5
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 25 8.6
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 236 QARISH*VCFRQMHLSQGQHQRIAPVSTSSCHSQAPWCSHCKLPPCIIPNTIHAFSQNLL 57
QA I+ R +H + Q Q A + S +S++P S +LPP P A + +
Sbjct: 33 QAAIAKATELRALHAALLQGQGAAAANAGSAYSRSPAASLIRLPPGASPALSKAAAAAVA 92
Query: 56 *SYP 45
YP
Sbjct: 93 EDYP 96
>04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708
Length = 538
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 168 SSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSGLTLTKAPRAE 13
+S H + S ++ +T+H T+ N R FS+ +LSG+ + A AE
Sbjct: 177 NSCAHHTKAMESMSIEEEYISTLH-TRSNARFFSRSKQQLSGVEMEAAAAAE 227
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 176 QRIAPVSTSSCHSQAPWCSHCKLP 105
+RI PV +CHS A WC H + P
Sbjct: 213 RRIKPVPKLACHSVASWC-HPRAP 235
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 28.3 bits (60), Expect = 0.92
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 227 ISH*VCFRQMHLSQGQHQRIAPVSTSS--CHSQAPW 126
I + + RQ H+ QH +TSS CHS +PW
Sbjct: 250 IMYQLMLRQQHVDYTQHWDTHADTTSSTCCHSSSPW 285
>07_03_1266 - 25310196-25310400,25310558-25310784
Length = 143
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 194 LSQGQHQRIAPVSTSSCHSQAPWCSHC 114
+ +G H++I+ S + PWCS C
Sbjct: 19 IMEGTHKQISSGGASGGYCTVPWCSIC 45
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 157 PLHRVIRKHPGAATASYHHA 98
P H + HPG A A +HHA
Sbjct: 133 PPHFPLFHHPGVAAAQHHHA 152
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 234 GSNFTLSLFSPDASFSRTTPENSSSFHFIVS 142
G +FTL FSP +S S +T F VS
Sbjct: 47 GGSFTLGFFSPASSSSSSTSRRYLGIWFSVS 77
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 66 APWCGHCK 73
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 411 APWCGHCK 418
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 192 APWCGHCK 199
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 56 APWCGHCK 63
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 175 APWCGHCK 182
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 58 APWCGHCK 65
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 68 APWCGHCK 75
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = -1
Query: 134 APWCSHC-KLPPCI 96
APWC HC KL P +
Sbjct: 397 APWCGHCQKLAPIL 410
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 72 APWCGHCK 79
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 134 APWCSHCK 111
APWC HCK
Sbjct: 146 APWCGHCK 153
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 219 LSLFSPDASFSRTTPENSSSFH--FIVSFASTLVQPLQAT 106
+S+ D S R TP+N++S H F+ +TL PL+ T
Sbjct: 263 ISVSGSDGSSGRFTPKNNASMHSTFLQEGTNTL-SPLRNT 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,273,650
Number of Sequences: 37544
Number of extensions: 107566
Number of successful extensions: 312
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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