Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_P06
(236 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone re... 31 0.86
BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein. 30 1.5
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr... 30 1.5
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr... 30 1.5
AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane muc... 30 1.5
AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin ... 30 1.5
AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple ... 27 8.0
AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2... 27 8.0
AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1... 27 8.0
AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein. 27 8.0
>L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone
receptor BD73 protein.
Length = 579
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 231 SNFTLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLK 52
S+ +SLF+ S N + + + + TL++ L+ M N + IF+K LK
Sbjct: 498 SDEEMSLFTAVVLVSADRSGNRKNVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLK 557
Query: 51 LSGL 40
L L
Sbjct: 558 LPDL 561
>BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein.
Length = 1224
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 222 TLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSG 43
T + S +AS TTP +S++F S AS+ LQ TTM + + S T+ LS
Sbjct: 257 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 316
Query: 42 LTLTKA 25
+T +
Sbjct: 317 TYVTSS 322
>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
protein.
Length = 4262
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 222 TLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSG 43
T + S +AS TTP +S++F S AS+ LQ TTM + + S T+ LS
Sbjct: 3526 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 3585
Query: 42 LTLTKA 25
+T +
Sbjct: 3586 TYVTSS 3591
>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
protein.
Length = 4493
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 222 TLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSG 43
T + S +AS TTP +S++F S AS+ LQ TTM + + S T+ LS
Sbjct: 3526 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 3585
Query: 42 LTLTKA 25
+T +
Sbjct: 3586 TYVTSS 3591
>AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane mucin
MUC17 protein.
Length = 1029
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 222 TLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSG 43
T + S +AS TTP +S++F S AS+ LQ TTM + + S T+ LS
Sbjct: 62 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 121
Query: 42 LTLTKA 25
+T +
Sbjct: 122 TYVTSS 127
>AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin
MUC3 protein.
Length = 648
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 222 TLSLFSPDASFSRTTPENSSSFHFIVSFASTLVQPLQATTMHNTKHNTRIFSKFTLKLSG 43
T + S +AS TTP +S++F S AS+ LQ TTM + + S T+ LS
Sbjct: 62 TTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSS 121
Query: 42 LTLTKA 25
+T +
Sbjct: 122 TYVTSS 127
>AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple
domains 3 protein.
Length = 3501
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 161 VSTSSCHSQAPWCSHCKLPPCII 93
++T+ C S W +H K P C++
Sbjct: 2528 LTTAVCQSDGTWSNHNKTPRCVV 2550
>AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2
protein.
Length = 3667
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 161 VSTSSCHSQAPWCSHCKLPPCII 93
++T+ C S W +H K P C++
Sbjct: 2629 LTTAVCQSDGTWSNHNKTPRCVV 2651
>AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1
protein.
Length = 3707
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 161 VSTSSCHSQAPWCSHCKLPPCII 93
++T+ C S W +H K P C++
Sbjct: 2669 LTTAVCQSDGTWSNHNKTPRCVV 2691
>AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.
Length = 2977
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 161 VSTSSCHSQAPWCSHCKLPPCII 93
++T+ C S W +H K P C++
Sbjct: 1939 LTTAVCQSDGTWSNHNKTPRCVV 1961
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,241,765
Number of Sequences: 237096
Number of extensions: 634262
Number of successful extensions: 5453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5453
length of database: 76,859,062
effective HSP length: 57
effective length of database: 63,344,590
effective search space used: 1330236390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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