Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P05
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    28   0.36 
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    24   7.8  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    24   7.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   7.8  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 72  NILVVYLKKKKKNSRLVLSLSPSC 1
           NILV+  +K    S+L+LS SP+C
Sbjct: 451 NILVLLNEKPSSGSQLILSASPTC 474


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 57  IPPI--YFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEA 188
           +PP+  +F  T +  CY    +W  +   +  P+ F  K ++   A
Sbjct: 454 MPPVKPHFDTTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSA 499


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 81  TYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEAHVV 197
           T + SC + N  W   TS   TP+  + + +  T + V+
Sbjct: 340 TATMSCQATNSAWMAATSLPPTPSEAVCECMDSTRSCVI 378


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 72  FIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKK 179
           F E    S  +   NW+  T A ST  LF++ +  K
Sbjct: 287 FCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSK 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 972,646
Number of Sequences: 5004
Number of extensions: 13514
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)