Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P05
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S75989-1|AAB33570.1|  632|Homo sapiens gamma-aminobutyric acid t...    30   2.3  
AY275431-1|AAQ19120.1|   88|Homo sapiens cancer susceptibility g...    29   3.0  

>S75989-1|AAB33570.1|  632|Homo sapiens gamma-aminobutyric acid
           transporter type 3 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 36  FFFFFLNIPPIYFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTE 185
           F FF +   P+ +   Y+   + Y I W    S+     L+I   V KTE
Sbjct: 528 FIFFLIKYKPLKYNNIYTYPAWGYGIGWLMALSSMLCIPLWICITVWKTE 577


>AY275431-1|AAQ19120.1|   88|Homo sapiens cancer susceptibility gene
           protein.
          Length = 88

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 6   RERERELVSSFFFFFLNIPPIYFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLV 173
           RER  +  S  F F + + P + ++ Y  S   +N  W+    A   P+LFI+ LV
Sbjct: 35  RERNTQRASFSFSFLIALSP-HTVD-YCHSYELFNRRWHGHVLATQRPSLFILMLV 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,933,961
Number of Sequences: 237096
Number of extensions: 505769
Number of successful extensions: 4716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4716
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)