Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P05
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   7.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 69  YFIETYSPSC----YSYNINWNKTTSAASTPTLFIMKLVKKTEAH 191
           Y   TY P+C     S+   W K  +A +  TL +  L+  +  H
Sbjct: 247 YLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 291


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  YFIETYSPSCYSYNINW 119
           Y I+ Y P C    ++W
Sbjct: 244 YLIQIYIPCCMLVIVSW 260


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  YFIETYSPSCYSYNINW 119
           Y I+ Y P C    ++W
Sbjct: 244 YLIQIYIPCCMLVIVSW 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,682
Number of Sequences: 438
Number of extensions: 1526
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)