Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P04
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    27   2.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   5.5  

>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 200 IMRAPVNKMSEEIRDKVVEWKSADCQPRAIRKCTEITSHNHL 325
           + +A  N+  E++  KVV+    +  PR  RK   + SHN L
Sbjct: 138 VYKAIHNRTGEKVAIKVVQRAQPNTDPRDPRKRQGVESHNIL 179


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 60   D*DILKEKICAADDDESSQA 119
            D D+L+ ++CA  DDE+S +
Sbjct: 1312 DIDLLRRRLCAKSDDETSSS 1331


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 EEIRDKVVEWKSADCQPRAIRKCTEITSHNH 322
           EE+RD   EWK+   + R  +  T+I+ ++H
Sbjct: 124 EELRDPNDEWKAWQKRMRYKKNLTKISKNHH 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,313
Number of Sequences: 5004
Number of extensions: 39197
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)