Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P04
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    31   0.41 
Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear recep...    28   3.8  
U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  NMCCGRRRIFTGCSPAETSSCR 148
           N CCG+R +F G S   T +CR
Sbjct: 215 NRCCGKRDVFDGSSSNRTQTCR 236



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 83  NMCCGRRRIFTGCSPAETSSCR 148
           N CC +R +F G S   T +CR
Sbjct: 299 NRCCAKRDVFEGFSNNRTQTCR 320



 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 83  NMCCGRRRIFTGCSPAETSSCR 148
           N CC +R +F G S     +CR
Sbjct: 131 NRCCAKRDVFDGSSSNRNETCR 152


>Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical
           protein F32B6.1 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 317 CAMLFQYISGLHAAGSQLISIRRPCHVS 234
           C M F   SGL AAG Q++S  R  ++S
Sbjct: 390 CIMFFSSESGLSAAGRQIVSAAREKYLS 417


>U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical
           protein F26B1.2c protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 74  ERKNMCCGRRRIFTGCSPAET 136
           E +  C  R +IFTGC+P  T
Sbjct: 132 ELREKCSARLKIFTGCAPGST 152


>U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical
           protein F26B1.2a protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 74  ERKNMCCGRRRIFTGCSPAET 136
           E +  C  R +IFTGC+P  T
Sbjct: 149 ELREKCSARLKIFTGCAPGST 169


>AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear receptor
           NHR-4 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 317 CAMLFQYISGLHAAGSQLISIRRPCHVS 234
           C M F   SGL AAG Q++S  R  ++S
Sbjct: 390 CIMFFSSESGLSAAGRQIVSAAREKYLS 417


>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 K*AKRYVTRSSNGNQLTASRVQSGNVLK*HRTIISHNNKYTLFAVSQH 365
           K  +++     N + L   R+    VLK +  ++ ++N+ +LFA SQH
Sbjct: 694 KEVQKHFRDEMNVDGLIFDRIGEDEVLKQNVFVVENHNRSSLFARSQH 741


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,348
Number of Sequences: 27780
Number of extensions: 223391
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)