Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P04
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.6  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   4.6  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 509 SNY-YQSYENYKLMSIQFKLELY*SMNAIKQ 420
           +NY Y +Y NY      +  +LY ++N I+Q
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKLYYNINYIEQ 117


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 SNYYQSYENYKLMSIQFKLELY*SMNAIKQSEFDISLH 396
           +NY  +  NYK +      +LY ++N I+Q    + ++
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 SNYYQSYENYKLMSIQFKLELY*SMNAIKQSEFDISLH 396
           +NY  +  NYK +      +LY ++N I+Q    + ++
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 SNYYQSYENYKLMSIQFKLELY*SMNAIKQSEFDISLH 396
           +NY  +  NYK +      +LY ++N I+Q    + ++
Sbjct: 87  NNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIY 124


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 322 SLIIINIHYSQFLNISKL 375
           SLI  N HYS+F  +S++
Sbjct: 48  SLIGANEHYSKFFPVSEI 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,787
Number of Sequences: 438
Number of extensions: 2720
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)