Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P03
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0607 + 19285580-19286138,19286734-19287668                       27   7.5  
04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147     27   7.5  

>08_02_0607 + 19285580-19286138,19286734-19287668
          Length = 497

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 245 SGWR*VRASLVGAPPSVCW 189
           SGW     S+VG  P VCW
Sbjct: 396 SGWNSTLESIVGGVPMVCW 414


>04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147
          Length = 239

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 268 YNDDRQSLAVGGEYARHSLAPPPLCAG-ERWCG 173
           +   +++ A GG +  H++ PPP  A  + W G
Sbjct: 114 WEQQQEAAATGGSHGGHAVPPPPPAASLQTWTG 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,212
Number of Sequences: 37544
Number of extensions: 225666
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)