Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P01
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.6  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   3.5  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 456 LIKNFDNLFIRTLFVFLLFCHY*LYLGGSFIVLYFFKINF 575
           L+K    LF+ + FV+ L   + L+L  SF+V +    +F
Sbjct: 345 LLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVSFLLHGSF 384


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 299 YVQIKLFLSTIKIYYVNIMTLELLYLIFF 385
           Y+  K+F+S IK  Y   +T  + Y IFF
Sbjct: 202 YLVYKIFMSLIKSDYYFCLTATVQYAIFF 230


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 467 IFNQFSNIYNIVFICYNYTFQSI 399
           + NQFSN+ NI    +   F+SI
Sbjct: 6   VTNQFSNLQNIKIFTWKANFESI 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,719
Number of Sequences: 5004
Number of extensions: 41747
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)