Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_P01
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    30   1.0  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      27   7.3  
Z82059-4|CAB04877.1|  314|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 466 ISIIYSYGPCLYFYYFVIINYILEE 540
           IS++  Y P L FYYFV+  +I+ +
Sbjct: 505 ISLLIKYRPLLRFYYFVMFRFIMNK 529


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  LLLNFVAGFYIIYCGLFRMYRCIINLIFRMICRF 129
           LLL FV  F+ I CG+F+    ++ L  R +C F
Sbjct: 43  LLLIFVI-FFCITCGVFQALLSLVVLCIRSLCGF 75


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 263 RSRPP*IMSLIMYVQIKLFLSTIKIYYVNIMTLELLYLIFF 385
           RS+P     + ++V    +LS I +Y++NI+T  + YL+ F
Sbjct: 392 RSKPKSNNIMQIFVASGYYLSRI-LYFLNILTRSICYLLLF 431


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 263 RSRPP*IMSLIMYVQIKLFLSTIKIYYVNIMTLELLYLIFF 385
           RS+P     + ++V    +LS I +Y++NI+T  + YL+ F
Sbjct: 392 RSKPKSNNIMQIFVASGYYLSRI-LYFLNILTRSICYLLLF 431


>Z82059-4|CAB04877.1|  314|Caenorhabditis elegans Hypothetical
           protein T27E9.8 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 476 IIEIFNQFSNIYNIVFICYNYTFQSINNRFK 384
           I+EIF+Q S I  ++    NY FQSI   FK
Sbjct: 96  ILEIFHQ-SKINMLMINGSNYDFQSIKEEFK 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,638
Number of Sequences: 27780
Number of extensions: 225160
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)