Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O24
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   4.7  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   4.7  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 234 IYV*YVFVTVTCHNNQRSLTTTKLHAHFFKFYIVKYCSTN*TQIGYL-EVLCHYALLLGR 58
           I+V ++FV    +   +SL  T+   H++ + +V + +TN   + Y    LC   L L  
Sbjct: 394 IFVSFLFVYYMRYCTYKSLMRTQFAPHYY-YALVPFRATNTASLIYFASQLCRLTLPLCY 452

Query: 57  GFI 49
            F+
Sbjct: 453 NFV 455


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 184 SLIVVASNCYKNILNVN*IWHCNIFIERYFRLKTLSFVRKKITELHV 324
           SLI +  N Y   L+ N +  CNI   ++ RLK  + +  K  E ++
Sbjct: 464 SLIPILRNDYYVYLSHNLLTVCNIIKAQFQRLKNANSIPAKQVENYI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,567
Number of Sequences: 5004
Number of extensions: 30310
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)