Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O22
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    27   6.3  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 132 FIFINFSAPLLLVPMFK*YIYRGPKKN*PKIILTDCLLTP 251
           F+ +      L++P F  ++Y G  +N   ++LTD   TP
Sbjct: 159 FVILTIFFHALIIPTFFTFLYFGMYRNMLLMVLTDIFCTP 198


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 355 FTFTSDI*LHSSKVIAYCSINVIIHVIFLLI 447
           FTF  +  LH +  + Y  +N+I H +  L+
Sbjct: 99  FTFWLNYKLHETSTLGYHVVNIICHTVATLV 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,585
Number of Sequences: 27780
Number of extensions: 180170
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)