Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_O19
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 28 0.80
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 1.9
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 26 4.3
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 5.7
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.5
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 25 7.5
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 7.5
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 7.5
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 9.9
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.9
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 28.3 bits (60), Expect = 0.80
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 355 RIFKRENIGYEVIIEDLQKRINEENPPLDENE---IELQD 465
R+ R+ +G +ED QK + EE P +DE E ELQD
Sbjct: 321 RLKIRDEMGIGKKVEDEQKTVVEEIPEMDEEERLDQELQD 360
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 46 SVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEPQ 189
SV +P+ D + DDSE+ E T+ + E A+ A+ A EEP+
Sbjct: 382 SVDEPQKDSK-DDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPE 428
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 111 RSLRNRSYCRHFSHHSKTNCT----ERRTTEGRLHWCTNMEGIYKVV 239
R R RS FSHHS+T+ + R++ G L + GIY V
Sbjct: 167 RERRERSISPSFSHHSRTSISGQSHSSRSSRGPLLNAPTLYGIYSGV 213
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 379 GYEVI--IEDLQKRINEENPPLDENE 450
G+EVI I LQK +N E PLD +E
Sbjct: 340 GFEVIEFIPALQKELNVELSPLDNSE 365
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 346 NVTRIFKRENIGYEVIIEDLQKRINEENPPLDENEIELQDRRGHLDDMEA 495
++ ++K + E I L +I+E N L+EN + + + +LD E+
Sbjct: 387 HIQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKES 436
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 373 NIGYEVIIEDLQKRINEE-NPPLDENEIEL 459
N+ YE I DL+KR++ E N P N + L
Sbjct: 776 NVVYEAKIFDLEKRLSSEANAPELHNPVNL 805
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 384 ISNVFSFKNTCDIY*SIRFN*YIDRSLVAT 295
I NVF+ + CD+Y F Y++ S V T
Sbjct: 318 IGNVFNSISGCDLYSLSNFLLYLENSCVIT 347
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 7.5
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Frame = +1
Query: 91 REEFSTDDPLETEVTADT---LAITPKLIAPKEEPQK--VDYTGAQIWKVSTKSSGIRVT 255
+ +F+TD L TEVT T + + K + K P ++ Q W K T
Sbjct: 278 KNQFATDFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAWRT 337
Query: 256 IGRLRRRNLISTWGGNQTSIDILIKPNTLVNVTRIFKRENIGY 384
I + N + G D L T ++ + K +GY
Sbjct: 338 IAEREKLNAHALEVGTWAFCDFLF-GRTYNVISSMSKARKLGY 379
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 355 RIFKRENIGYEVIIEDLQKRINEENPPLDENEIELQDRRGHLDD 486
R+ + N +E I++ NE N P+ + +I +GH+D+
Sbjct: 74 RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDE 117
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 28 EWPKRNSVQQPKPDVRLDDSE 90
+W KRN ++ P+ D+ + SE
Sbjct: 42 QWAKRNDLENPEDDIIVFSSE 62
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 259 GRLRRRNLISTWGGNQTSID 318
G L+ NLI+ W N+ +ID
Sbjct: 178 GHLKLSNLIAVWDNNKITID 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,663
Number of Sequences: 5004
Number of extensions: 45414
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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