Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O19
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     33   0.20 
06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732           30   1.1  
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915           29   3.3  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    27   7.6  
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467     27   7.6  

>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 410 FCRSSIITSYPM-FSLLKIRVTFTRVLGLISISIEVWL 300
           F R S+ TSYPM F    + ++FT +L L+ +S+  WL
Sbjct: 298 FLRDSLHTSYPMVFCRGLLSLSFTLLLSLVKVSMASWL 335


>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
          Length = 139

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 283 ISTWGGNQT-SIDILIKPNTLVNVT 354
           I  WGGN   S+DI + PN+L NVT
Sbjct: 8   IGPWGGNGGGSVDISVPPNSLKNVT 32


>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
          Length = 1270

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 367 RENIGYEVIIEDLQKRINEENPPLDE 444
           R+NIG + +++DL K+ +E    LDE
Sbjct: 61  RDNIGLQGLLQDLSKKADEAEDALDE 86


>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
            196685-196780,197248-197399,198683-198823,199068-199319,
            199463-199603,199686-200003,200146-200232,201025-202006,
            202091-202179,202968-203072,203155-204306,204844-205359,
            205455-205650,206299-207182
          Length = 1979

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316  DILIKPNTLVNVTRIFKRENIGYEVIIEDL-QKRINEENPPLDENEIELQDRRGH 477
            +++++   L++V    + E++  + ++E + +KRIN  N      E  +QD++G+
Sbjct: 1175 EMILEQKELISVLETHREEHVLRDELLERITEKRINLINMVFSLREKNIQDKQGN 1229


>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
          Length = 640

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  KRNSVQQPKPDVRLDDSEREEFSTDDPLE 123
           K+    +PKP    DD E +E   DD LE
Sbjct: 134 KQKKAAEPKPPRDTDDDEDDEEEADDDLE 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,209
Number of Sequences: 37544
Number of extensions: 273599
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)