Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_O18
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.002
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.037
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 32 0.050
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.087
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.11
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.9
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 2.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 3.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 3.3
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 4.3
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.5
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 25 7.5
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 7.5
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 7.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 24 9.9
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 36.3 bits (80), Expect = 0.002
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 330 ECPVCMETMSAPIFQCQSGHSLCNSC-TNTLC-PPICPICRQPM 455
ECP+C E + P F GH+ C C N L CP CRQ +
Sbjct: 84 ECPICTEALQRP-FTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 32.3 bits (70), Expect = 0.037
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Frame = +3
Query: 324 LPECPVCM-ETMSAPIF-QCQSGHSLCNSCTN---------TLCPPICPICRQPMTQ 461
+ ECP+C E + P+ C+ H+ C C + + PP+C CRQP +
Sbjct: 874 ITECPICCNEPIQNPLLLNCK--HACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNE 928
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.9 bits (69), Expect = 0.050
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 333 CPVCMETMSAPIFQCQSGHSLCNSCTNTLCP--PICPICRQP 452
C +C E AP+ S H+ C+ C P+CP CR P
Sbjct: 29 CLICHEYFRAPLITSCS-HTFCSFCIRDYLREHPMCPACRAP 69
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.1 bits (67), Expect = 0.087
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 333 CPVCMETMSAPIFQCQSGHSLCNSCTNTL 419
C VC++ AP+F GH C C + L
Sbjct: 606 CSVCLDPCLAPVFIIPCGHFTCQECMSML 634
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 30.7 bits (66), Expect = 0.11
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +3
Query: 285 SKVNKKVVGAAVDLPECPVCMETMSAPI-----FQCQSGHSLCNSCTNTLCPPICPICR 446
SK A ++LP C VC+E M + I CQ H+ C CP+CR
Sbjct: 192 SKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQ--HTFHCPCLQKWGNSSCPVCR 248
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 318 VDLPECPVCMETMSAPIFQCQSGHSLCNSC 407
++ +C +CM+ ++ + GH LC C
Sbjct: 741 IETLQCSLCMDVVAELLIIVPCGHFLCREC 770
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 346 WKQCLLQSSNVNQDIVCATRAPTRYALRFA 435
W QC +++QD++C +R + +R A
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIA 1066
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 274 TWRIRKLTKRLLELRWTYQNVQSAWKQCLLQSSNVNQDI 390
T RI LTK + + Y+++Q+ K + QSS + ++
Sbjct: 75 TIRIEFLTKEIAQQEAAYKDIQNTQKSLVTQSSTGSANV 113
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 324 LPECPVCMETMSAPIFQCQSGHSLCNSC 407
L CP C+E + GH C SC
Sbjct: 211 LAACPFCLEEKPVAARMSRCGHVYCFSC 238
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 371 PMSIRT*FVQLVHQHVMPSDLPYLPSTYD 457
P +++T LVH + P L YL STYD
Sbjct: 31 PFNVKT----LVHSLIPPGALSYLLSTYD 55
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 294 NKKVVGAAVDLPECPVCMETMSAPIFQ-CQSGHSLCNSC 407
N + A P C C +T + P+++ G LCN+C
Sbjct: 622 NTRRANATNPTPTCTNC-QTRTTPLWRRSPDGQPLCNAC 659
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +3
Query: 330 ECPVCMETMSAPIFQCQSGHSLCNSCTNTLCPP 428
+CP C + +F +C SC + LC P
Sbjct: 36 KCPGCFNITT--VFSHAQTVVICGSCASVLCQP 66
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 171 NDQNNIFPDVGAVNFTTGPTRTTAICTQRECNHY 70
N Q + P G + PTR A+ Q+EC +
Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +3
Query: 321 DLPECPVCMETMS--APIFQCQSGHSLCN-SCTNTLC---PPICPICRQPMTQM 464
D EC +C+ S +P+++ H + + +C + +CP+C+Q +T M
Sbjct: 494 DQRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNM 547
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 177 ISNDQNNIFPDVGAVNFTTGP 115
+ ND++N F D+ +N +T P
Sbjct: 319 LENDKDNYFDDLHPLNISTSP 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,490
Number of Sequences: 5004
Number of extensions: 42405
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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