Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_O15
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 29 0.40
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 28 0.91
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.7
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 4.9
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 4.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 6.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.5
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 302 VITKKSEKVSIADVFLKPPTKEDHVTIEPSESYIDDNEIVEDTTEDCDVKH 454
++ K ++ S+ L P + H + SE Y+DD I + C + H
Sbjct: 990 IVLKHTKNTSVLFTVLPAPLADTHKSFRKSEEYVDDLLIFMEGLPPCALIH 1040
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 370 IFFGGWFKENISNRDFFALFCYNSAIWIFIFNHSIN 263
IFFGG E S F +F YNS+ W I ++ I+
Sbjct: 871 IFFGGNLSEQSSGCVGFCIFEYNSSSWRNISHNLIS 906
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.6
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = -3
Query: 297 PSGYSSSI-TVLIIVFIFFNFSVRFSNSCLIVFTVVFRMIVTSFSTILTVSNVTCSSASP 121
P+ Y SS+ T+L +N++ ++S + + +TS S++ + S + +SASP
Sbjct: 45 PATYLSSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASP 104
Query: 120 NLVYPTRFSSNISSP*SAIDXXXXXXXXXTPVGNLVSAS 4
T S+ SS S+ +L S+S
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSS 143
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 356 PTKEDHVTIEPSESYIDDNEIVEDTTEDCDVKHEI 460
P+K ++ PS+S ID+NE D D + KH++
Sbjct: 104 PSKNHETSLSPSKSTIDNNERKLDNEID-NYKHDV 137
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -3
Query: 318 LFFVITVPSGYSSSITVLIIVFIFF-----NFSVRFSNSCLIVFTVVF-RMIVTSFSTIL 157
LFF+ + Y SS +L +F FF S FS S L+ ++F +++ FST+
Sbjct: 136 LFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLS 195
Query: 156 TVSNVTC 136
+ + C
Sbjct: 196 RLPRLFC 202
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 320 EKVSIADVFLKPPTKEDHVTIEPSESYIDDNEIVEDTTEDCDVKHEIVQ 466
++V++ D L P + + +E Y+ + +V TED E+ Q
Sbjct: 354 KQVNVTDASLSPNSHNTSDNEQNNEDYVSVSSLVGSETEDITYSKELSQ 402
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 282 SSITVLIIVFIFFNFSVRFSNSCLIVFTVVFRMIVTSFSTILTVSNVTCSSASP 121
S+I V ++VFIF N+S+ S + + + S+ L ++V+ S P
Sbjct: 199 SNIIVSVLVFIFTNYSLDLSKEKNVAALEEALNCMIAISSYLAKASVSVQSVLP 252
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 305 ITKKSEKVS-IADVFLKPPTKEDHVTIEPSESYIDDNEIVEDTTEDCDVKHEI 460
+ K+SE + I D L+ T+E V +S DD+ ++ + KHEI
Sbjct: 280 LIKESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEI 332
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = -3
Query: 225 SNSCLIVFTVVFRMIVTSFSTILTVSNVTCSSASPNLVYPTRFSSNISS 79
S++ L +V+ I+TS ST +TVS+ + SS +P+ Y T ++ S+
Sbjct: 235 SSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPS--YSTNLTTTGST 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,982
Number of Sequences: 5004
Number of extensions: 38525
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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