Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O15
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389...    30   1.2  
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551...    28   5.0  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    28   5.0  
02_04_0321 + 22020126-22020431,22020520-22021626                       28   6.5  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    27   8.7  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    27   8.7  

>04_03_0744 +
           19237901-19237912,19238119-19238611,19238860-19238928,
           19239124-19239140,19239260-19239357,19240019-19240156,
           19240710-19240899,19241175-19241307,19241505-19242442
          Length = 695

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
 Frame = -2

Query: 580 DSCSFYCSPNTFNIXISTSQSFLFGPNFNRTFDFYRALLNNFVFNIAVF-SSIFNYFVII 404
           DSC F   P+ F I  +   +F F  NFN ++  Y  L++  + N +VF  S+ ++    
Sbjct: 258 DSCGFDNFPS-FGIE-AFKNTFYF--NFNPSYVGY-GLISPHIVNCSVFLGSVISW---- 308

Query: 403 NVRF*GFYSYMIF--FGGWFKENISNRDFFALFCYNSAIWIFI 281
                GF    I    G W+ +N+SN DF  L+ Y   I I +
Sbjct: 309 -----GFLWPFIAKQAGDWYPDNLSNTDFRGLYGYKVFIAISV 346


>12_02_1110 +
           26154024-26154314,26154400-26154944,26155023-26155109,
           26155237-26155293,26155369-26155607,26155715-26155833,
           26155945-26156031,26156117-26156194
          Length = 500

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 333 IETFSLFFVITVPSGYSSSITVLIIVFIFFNFSVRFSNSCLIVFTVVFRMIVTSFSTIL 157
           +  FS+F VIT    +S   T+L++V + +  S  +++S  ++  V+    + S S  L
Sbjct: 341 VARFSVFVVITASVAFSILATILVLV-LRYPLSTLYTSSTTVIEAVIKLTPLLSISIFL 398


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/80 (20%), Positives = 36/80 (45%)
 Frame = -3

Query: 363 LVGGLRKTSAIETFSLFFVITVPSGYSSSITVLIIVFIFFNFSVRFSNSCLIVFTVVFRM 184
           +V   RK   ++ F LF ++ V     + +T   IV + +N+++  S+   +++  + R 
Sbjct: 689 VVNQFRKKKWLD-FLLFTLLIVCLTLFNEVTSFFIVILLYNYTICLSSMISLLYLQILRG 747

Query: 183 IVTSFSTILTVSNVTCSSAS 124
                + + T   + C   S
Sbjct: 748 EENKIAELGTTQGINCCLVS 767


>02_04_0321 + 22020126-22020431,22020520-22021626
          Length = 470

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 348 RKTSAIETFSLFFVITVPSGYSSSITVLIIVFIFFNFSVRFSNSCLIVF 202
           R+ S +   SLFFV  + +  + +I +L+I  I   F+V F+N    V+
Sbjct: 59  RRNSMLIGASLFFVGAILNCAAVNIAMLVIGRILLGFAVGFTNQSAPVY 107


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 347 LKPPTKEDHVTIEPSESYIDDNEIVEDTTEDCDVKHEIV 463
           L+PPT ED       +  + D   VE   +DC++++E V
Sbjct: 585 LEPPTDEDSCCSGYFKCNLQDMPNVEKLIDDCELRYEQV 623


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 472 ALLNNFVFNIAVFSSIFN 419
           +LLN FVFN  VF  +FN
Sbjct: 877 SLLNTFVFNTFVFCQVFN 894


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,924
Number of Sequences: 37544
Number of extensions: 193262
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)