Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_O13
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 302 3e-83
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 177 1e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 169 3e-43
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 141 7e-35
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 31 0.18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.73
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 9.0
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 9.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 302 bits (741), Expect = 3e-83
Identities = 140/207 (67%), Positives = 163/207 (78%)
Frame = +1
Query: 4 EAGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXX 183
++GAGN WAKGHYTEGAEL D+VLDVVR+E+E+CD LQGFQ
Sbjct: 94 QSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLS 153
Query: 184 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 363
KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFAN 213
Query: 364 TLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFGPL 543
TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GF PL
Sbjct: 214 TLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
Query: 544 TSRGSRQYRALTGPELTQQMFDAKNMM 624
+ GS ++A++ PELTQQMFDA NMM
Sbjct: 274 AAIGSSSFQAVSVPELTQQMFDANNMM 300
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 177 bits (430), Expect = 1e-45
Identities = 80/204 (39%), Positives = 122/204 (59%)
Frame = +1
Query: 13 AGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIR 192
A NN+A+GHYT G E++DSVL+ +R+ +++C LQGF ++
Sbjct: 103 ASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLN 162
Query: 193 EEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLK 372
EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L
Sbjct: 163 MEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLD 222
Query: 373 LSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFGPLTSR 552
+ PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + + P+ S
Sbjct: 223 IERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSA 282
Query: 553 GSRQYRALTGPELTQQMFDAKNMM 624
+ + + E+T Q F+ N M
Sbjct: 283 AKAFHESNSVQEITNQCFEPYNQM 306
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 169 bits (411), Expect = 3e-43
Identities = 78/204 (38%), Positives = 118/204 (57%)
Frame = +1
Query: 13 AGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIR 192
A NN+A+GHYT G ELVD V D +R+ +++C LQGF ++
Sbjct: 99 ASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLA 158
Query: 193 EEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLK 372
EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L
Sbjct: 159 MEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLD 218
Query: 373 LSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFGPLTSR 552
+ P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + + P+ S
Sbjct: 219 IERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSA 278
Query: 553 GSRQYRALTGPELTQQMFDAKNMM 624
+ + + E+T Q F+ N M
Sbjct: 279 AKAFHESNSVQEITNQCFEPYNQM 302
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 141 bits (342), Expect = 7e-35
Identities = 71/209 (33%), Positives = 112/209 (53%), Gaps = 4/209 (1%)
Frame = +1
Query: 10 GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKI 189
GAGNNWA G Y+ + + ++D++ +E++ D L+GF ++
Sbjct: 99 GAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERL 157
Query: 190 REEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 366
+ YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 158 NDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADR 217
Query: 367 LKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFGPLT 546
L PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P T
Sbjct: 218 LHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFT 277
Query: 547 SRGSRQYRAL---TGPELTQQMFDAKNMM 624
++ + +A+ T ++ +++ KN M
Sbjct: 278 NQQVEEAKAIRKTTVLDVMRRLLLPKNQM 306
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 30.7 bits (66), Expect = 0.18
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +2
Query: 134 TLSE-AVPAPVWAHYLSQRSVKSTPTES*THTQSSP----RPKYQTPSSNPTMRLSQCTN 298
T+S+ AVP+ +A+ +S RSV S T+S T++SP K S T+ S TN
Sbjct: 643 TVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702
Query: 299 --S*KTQTKHTVSITRHSTIFASARSN 373
S K K + ++ + +F RSN
Sbjct: 703 KKSQKINKKASPRVSLWTKLFGKFRSN 729
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.73
Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 5/174 (2%)
Frame = +2
Query: 14 PVTTGPRDTTQRALS*STQFLT*SEKNPNHVIVYKDSNSHTLSEAVPAPVWAHYL-SQRS 190
PVT+ P TT S S + + + N+ I + T L +
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTP 544
Query: 191 VKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFAS--- 361
V STP + T S+ P TP ++ +S T T T T S ++ S
Sbjct: 545 VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI 604
Query: 362 -ARSNYLHPPMEISITXXXXXXXXXXXXXXXXVSLMLIFVNLPSTWFPSPVSTS 520
+ ++ ++S S+ L N ST F S S S
Sbjct: 605 TSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSIS 658
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 28 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 117
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 295 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 474
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 475 RKLAVNMV 498
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = +2
Query: 188 SVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFASAR 367
S S+P+ S T T +SP + SS+ + S ++S + + + S + S+ +S+
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 198
Query: 368 SNYLHPPMEISITXXXXXXXXXXXXXXXXVS 460
S+ + IT S
Sbjct: 199 SSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 95 PNHVIVYKDSNSHTLSEAVPAPVWAHYLSQRSVKSTPTES 214
P VIV +DS S L+ +P P H L P+ S
Sbjct: 23 PQEVIVIEDSASPRLTPNLPPPFSVHQLQSFVPPQPPSSS 62
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 310 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 414
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 387 LWRSQSLSLPHHVWRHHL 440
LW S S SL H++ HHL
Sbjct: 257 LWYSTSYSLNFHLFYHHL 274
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.0
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 149 VPAPVWAHYLSQRSVKST-PTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHT 325
V APVW++ S T T S S P ++ SS P ++ + T+ T
Sbjct: 121 VTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVT 180
Query: 326 VSITRHSTIFASARSNYLHP 385
S S + A++ S+Y+ P
Sbjct: 181 SSYPASSEV-ATSTSSYVAP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,333
Number of Sequences: 5004
Number of extensions: 50716
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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