Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O12
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.48 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.4  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    25   4.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   5.9  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 65  YSKFVLKKNLEKLINFLRE*KENIEKF*K 151
           YSK +++  L KL++ + E K+N+++F K
Sbjct: 846 YSKAIMQSGLSKLLSSINENKDNLKEFSK 874


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 251 CIITPRRAKYSHTLYSRMHAAPQAKKFIITLSIIFRIFQCFLFILLENL 105
           CI TP + KY+ +L  R      +K+FI  LS   + F+  + +L  +L
Sbjct: 57  CIATPSQCKYADSLKER----TPSKQFIAELSQRQKCFEYLMELLCPSL 101


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 221 SHTLYSRMHAAPQAKKFIITLSIIFRIFQCFLF 123
           S  +  +MHAAP+    ++TL ++ + +  FLF
Sbjct: 46  SPEILEKMHAAPKPNYPVVTLDVLTQ-YDAFLF 77


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 176 FWLVVPRAFDYIKCVNILHDAALL 247
           F LV+ R  DY   +NILH+A L+
Sbjct: 104 FLLVLVRMTDYWIFINILHNALLV 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,535
Number of Sequences: 5004
Number of extensions: 27752
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)