Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O12
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    28   3.4  
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781...    27   7.8  

>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 179 KKFIITLSIIFRIFQCFLFILLENLLISPNFFSIQTSNNTLFTFRFFYIRREN 21
           K  + T + I  I  CF+ +     L   +F+ + T+  T   FR+ Y RR N
Sbjct: 203 KAMLKTPASIVLIIYCFICVWFVGGLSVFHFYLMSTNQTTYENFRYRYDRRAN 255


>06_03_0025 -
           15577231-15577420,15577682-15577813,15578025-15578173,
           15579012-15579071,15593208-15593297,15593604-15593871,
           15594517-15594608,15595355-15595441,15597333-15597440,
           15597709-15597822,15598253-15598420,15599442-15599579,
           15599699-15599908,15600986-15601237,15601965-15602111,
           15603327-15603443
          Length = 773

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 17  HYFLF*YKKNER*IMYYSKFVLKKNLEKLINFLRE*KENI 136
           H  +F  K ++  +  +SK  +KK LEK IN LRE +++I
Sbjct: 684 HVLIFCNKTDK--VTAHSKEFIKKQLEKEINKLRESRKDI 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,568,708
Number of Sequences: 37544
Number of extensions: 123811
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)