Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O11
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   3.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.6  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   6.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.1  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   8.1  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 150 ILNLLIVPGAPIMYHVFYSIQLF 218
           IL  L+V  AP   H++Y+IQLF
Sbjct: 123 ILTALLVGMAPESMHLWYTIQLF 145


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 444 YNFSYLSEKSFKIFFSHSRD*PDITHRLPKNHVT 545
           Y F Y+ + +F +  +H      + HRL  +H T
Sbjct: 222 YVFDYIKDANFDVLIAHYLGVDHVGHRLGPDHPT 255


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +2

Query: 149  YFKFINCSWGSNHVSCFLFHTVIHCMISF---FSNHWKKLTIFFCTGHNYF 292
            Y  + + S G     C   H V+ CM++F   F+  W   + F      +F
Sbjct: 2874 YVLYTSGSTGKPKGCCLTHHNVVQCMLAFQDQFAGEWDTNSRFLAFASFHF 2924


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 488 QPLQRLARYYTQITKKPCHLYTFV 559
           Q LQ L+R Y    K+P  +YTF+
Sbjct: 635 QDLQALSRIYRSGQKRPVCIYTFL 658


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 439  QHITSAICQKSPLKFFSATPETSQILHTDYQKTMSLVHICS 561
            +HI +++C  +  ++F  TP+    L   Y + + ++ IC+
Sbjct: 999  RHIVNSVCDNAVSQYFLVTPKLLPDL--TYHRNLKVLCICN 1037


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 149 YFKFINCSW 175
           YF+FINC+W
Sbjct: 182 YFRFINCNW 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,767
Number of Sequences: 5004
Number of extensions: 49996
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)