Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_O10
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   1.0  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.2  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    24   9.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   9.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   9.7  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    24   9.7  

>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 7   GVKPIDKREGAGPHNWGTLKDEIDEINKXXXXXXXXXXKAPEAGAG 144
           G + + +RE A     G + DE+ E +K           AP++ AG
Sbjct: 56  GPRAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAG 101


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = -2

Query: 315 HYQILPLAKVLTFTGLSQIIVRHRTLC-ISESFILIQGEFPWFFLSGCW-AFGFRLLTVS 142
           HY  LP   +L   G     V+    C +    I  Q    W  + GC  A  F LL + 
Sbjct: 38  HYSTLPSCDLLLIRGE----VKENARCFLHNPKISHQHHSFWSLIEGCLEALQFGLLAIL 93

Query: 141 STSFRSFLFSGFAFRACLVNFIDLIFKS 58
                  LFS FA+ AC   F  ++  S
Sbjct: 94  QG-----LFSQFAWEACSCTFACMLLTS 116


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 20/79 (25%), Positives = 42/79 (53%)
 Frame = +2

Query: 158 RNPNAQHPLRKNHGNSPWMSIKLSEMHNVRCLTII*ERPVKVRTLANGRIW*CLSARKKV 337
           RNP+ +  LR N+G S +  + + ++H    L I+  + + +R +A       +   K+ 
Sbjct: 284 RNPSYRGFLRINNGESIFNLLCIEDLHESVNLDILCLKDI-LRNIAQSSKE-AMYIVKRH 341

Query: 338 NAERTTKATRNTTSPTILN 394
           N+ ++    R+TT+ +I+N
Sbjct: 342 NSSQSFYGNRSTTNFSIIN 360


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 189 FLSGCWAFGFRLLTVSSTSFRSFL 118
           F  GCW   FR+    +T  R +L
Sbjct: 78  FDEGCWGMAFRIPAKYATQVREYL 101


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -2

Query: 234 ISESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSFLFSGFAFRACL 88
           I    IL+     +FF +GC   G   L     + + + F   +++A L
Sbjct: 266 IESCIILLMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNMSYKAKL 314


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 1402

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 55 PNYAGQRLHVYRLVSRL 5
          PN+   RL VYRL  RL
Sbjct: 15 PNFKALRLKVYRLADRL 31


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 149 VSNRNPNAQHPLRKNHGNSPWMSIKLS---EMHNVR 247
           VS  NPN   PL+   GN  W    L     MH+++
Sbjct: 190 VSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQ 225


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 220  KALRNAQRTMPNYNLRKAGEGEDLSQWK 303
            +AL ++QRT      R A +   +SQWK
Sbjct: 1578 QALSSSQRTRARLRARSAKQRFPVSQWK 1605


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 299 HWLRSSPSPAFLKL*LGIVRC 237
           ++ R  P PAFLK+ +G+  C
Sbjct: 3   YFARLKPPPAFLKMRVGVQGC 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,376
Number of Sequences: 5004
Number of extensions: 24656
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)